miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 22510 0.66 0.999677
Target:  5'- gUGGCcACGGGUUUCUG-CGguGagaggagcgucauaGGCCu -3'
miRNA:   3'- -ACUG-UGCCUAAAGACuGCguCg-------------UUGG- -5'
14007 5' -49.7 NC_003521.1 + 197608 0.66 0.999647
Target:  5'- ---uGCGGcg-UCUGGUGCAGCAgGCCg -3'
miRNA:   3'- acugUGCCuaaAGACUGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 25549 0.66 0.999647
Target:  5'- cGACgGCGGAcg-CUGuugUGCAgGCGGCCg -3'
miRNA:   3'- aCUG-UGCCUaaaGACu--GCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 13907 0.66 0.999647
Target:  5'- cGGCGCGGAggg--GGcCGCGGaGGCCg -3'
miRNA:   3'- aCUGUGCCUaaagaCU-GCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 170878 0.66 0.999647
Target:  5'- gGGCGCGGGUggUCaGGCGUccggcgucgcgaAGCAGgCg -3'
miRNA:   3'- aCUGUGCCUAa-AGaCUGCG------------UCGUUgG- -5'
14007 5' -49.7 NC_003521.1 + 216912 0.66 0.999647
Target:  5'- gGGCGCGGuggcagCgGAgGCGGuCGACCc -3'
miRNA:   3'- aCUGUGCCuaaa--GaCUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 160506 0.66 0.999647
Target:  5'- aGACcgcgGCGGGaggagGGgGCGGCAGCCu -3'
miRNA:   3'- aCUG----UGCCUaaagaCUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 65626 0.66 0.999647
Target:  5'- cGGCcCGcGAggagCUGACGCGcGcCAGCCa -3'
miRNA:   3'- aCUGuGC-CUaaa-GACUGCGU-C-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 37043 0.66 0.999647
Target:  5'- gGAUACGGugugCgugGACGCcgaaaaccGGCAGCUg -3'
miRNA:   3'- aCUGUGCCuaaaGa--CUGCG--------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 103212 0.66 0.999647
Target:  5'- aUGACcUGGAUgaggUCgccGGCcagGCGGCGGCCc -3'
miRNA:   3'- -ACUGuGCCUAa---AGa--CUG---CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 20440 0.66 0.999647
Target:  5'- cGGCACGGAgaUUCguaauuuuacagUGAUGCAGUAcaACa -3'
miRNA:   3'- aCUGUGCCUa-AAG------------ACUGCGUCGU--UGg -5'
14007 5' -49.7 NC_003521.1 + 193261 0.66 0.999559
Target:  5'- gGAUACGGucggCUGcggaGCGGguGCCg -3'
miRNA:   3'- aCUGUGCCuaaaGACug--CGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 3991 0.66 0.999559
Target:  5'- -aGCGCGGAggUCUGGCGCGa----- -3'
miRNA:   3'- acUGUGCCUaaAGACUGCGUcguugg -5'
14007 5' -49.7 NC_003521.1 + 145582 0.66 0.999559
Target:  5'- ---uGCGGcggcacGACGCGGCGGCCg -3'
miRNA:   3'- acugUGCCuaaagaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 46287 0.66 0.999559
Target:  5'- cGACGCGGcagacagUUCgauCGCAGCGaaucuaugacgGCCa -3'
miRNA:   3'- aCUGUGCCua-----AAGacuGCGUCGU-----------UGG- -5'
14007 5' -49.7 NC_003521.1 + 6381 0.66 0.999559
Target:  5'- gGuCGCGGAgg---GGCGCcGCAGCUa -3'
miRNA:   3'- aCuGUGCCUaaagaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 110519 0.66 0.999559
Target:  5'- gGACcUGGAUgcgcGGCGCcGCGGCCu -3'
miRNA:   3'- aCUGuGCCUAaagaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 208940 0.66 0.999559
Target:  5'- gUGcCGCGGc---CUGGCGguGCGguACCg -3'
miRNA:   3'- -ACuGUGCCuaaaGACUGCguCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 55520 0.66 0.999559
Target:  5'- uUGAcCACGGGUac---GCGCAGCGagcGCCg -3'
miRNA:   3'- -ACU-GUGCCUAaagacUGCGUCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 103111 0.66 0.999559
Target:  5'- gUGGCAgGcGAagagCUGGCGCAGCGcGCg -3'
miRNA:   3'- -ACUGUgC-CUaaa-GACUGCGUCGU-UGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.