miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 106112 0.66 0.99955
Target:  5'- gGGCACGG-------GCGUGGCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 102774 0.66 0.99954
Target:  5'- cGGCAgCGGcugcgcgaUGACGCgccGGCGGCCg -3'
miRNA:   3'- aCUGU-GCCuaaag---ACUGCG---UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 38444 0.66 0.999498
Target:  5'- gUGACACGGGUgacgaugaaaccgucUgggcUCUGGCGguGgGcGCCg -3'
miRNA:   3'- -ACUGUGCCUA---------------A----AGACUGCguCgU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 136399 0.66 0.999454
Target:  5'- cGGcCGCGGGccgcgUgUGAgGCAGaCAGCCg -3'
miRNA:   3'- aCU-GUGCCUaa---AgACUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 76204 0.66 0.999454
Target:  5'- cGGuCGCGGuggugguaUgaGugGCGGCGGCCg -3'
miRNA:   3'- aCU-GUGCCuaa-----AgaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 46390 0.66 0.999454
Target:  5'- gGGCGCGGGgugCguggGGCGC-GCgGGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGa---CUGCGuCG-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 65296 0.66 0.999454
Target:  5'- -uGCugGGGgcgCUGuCGCAGCu-CCg -3'
miRNA:   3'- acUGugCCUaaaGACuGCGUCGuuGG- -5'
14007 5' -49.7 NC_003521.1 + 80970 0.66 0.999454
Target:  5'- aUGACgACGGGgcgCgaguaGCAGCGGCCc -3'
miRNA:   3'- -ACUG-UGCCUaaaGacug-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 127741 0.66 0.999454
Target:  5'- uUGGCACGGugcUCuUGAagagcCGCAGCGucuCCu -3'
miRNA:   3'- -ACUGUGCCuaaAG-ACU-----GCGUCGUu--GG- -5'
14007 5' -49.7 NC_003521.1 + 138712 0.66 0.999454
Target:  5'- cGGCACGGGcgcuggCUGGUGguGCGuCCg -3'
miRNA:   3'- aCUGUGCCUaaa---GACUGCguCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 100004 0.66 0.999454
Target:  5'- cGGCGaaGAUcUUCUccaccaccagacGACGCAGCAGCg -3'
miRNA:   3'- aCUGUgcCUA-AAGA------------CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 172807 0.66 0.999454
Target:  5'- cGugGCGGugaggCUcACGCAGCugggGGCCg -3'
miRNA:   3'- aCugUGCCuaaa-GAcUGCGUCG----UUGG- -5'
14007 5' -49.7 NC_003521.1 + 213307 0.66 0.999442
Target:  5'- gGugACGGAcaUCaugaugaagaggaUGGCGCcGUAGCCg -3'
miRNA:   3'- aCugUGCCUaaAG-------------ACUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 114960 0.66 0.999442
Target:  5'- cGACACGGA-------CGCGGCcACCa -3'
miRNA:   3'- aCUGUGCCUaaagacuGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 54425 0.67 0.999327
Target:  5'- uUGACGCcguGGAag-CUGACGCGGUuguuGGCg -3'
miRNA:   3'- -ACUGUG---CCUaaaGACUGCGUCG----UUGg -5'
14007 5' -49.7 NC_003521.1 + 66869 0.67 0.999327
Target:  5'- gGGCACGGuga-CUGugGCcgaGACCa -3'
miRNA:   3'- aCUGUGCCuaaaGACugCGucgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 114934 0.67 0.999327
Target:  5'- cGGCugcUGGAgagCUGcucGCGCAGCGGCg -3'
miRNA:   3'- aCUGu--GCCUaaaGAC---UGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153482 0.67 0.999327
Target:  5'- -cACGCGGAUgcccUUGccGCGCAGCugcGCCu -3'
miRNA:   3'- acUGUGCCUAaa--GAC--UGCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 107319 0.67 0.999327
Target:  5'- cGcCGCGGGUUg--GGCcccGCAGCAGCg -3'
miRNA:   3'- aCuGUGCCUAAagaCUG---CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 77483 0.67 0.999327
Target:  5'- aUGAgGCGGGgaUCc--CGCAGCAuACCg -3'
miRNA:   3'- -ACUgUGCCUaaAGacuGCGUCGU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.