miRNA display CGI


Results 61 - 80 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 114934 0.67 0.999327
Target:  5'- cGGCugcUGGAgagCUGcucGCGCAGCGGCg -3'
miRNA:   3'- aCUGu--GCCUaaaGAC---UGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153482 0.67 0.999327
Target:  5'- -cACGCGGAUgcccUUGccGCGCAGCugcGCCu -3'
miRNA:   3'- acUGUGCCUAaa--GAC--UGCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 66869 0.67 0.999327
Target:  5'- gGGCACGGuga-CUGugGCcgaGACCa -3'
miRNA:   3'- aCUGUGCCuaaaGACugCGucgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 215344 0.67 0.999313
Target:  5'- cGACACcuugggugggugGGAcUUCUcGGCGCAGUAgaggcagaggacgGCCa -3'
miRNA:   3'- aCUGUG------------CCUaAAGA-CUGCGUCGU-------------UGG- -5'
14007 5' -49.7 NC_003521.1 + 17910 0.67 0.999299
Target:  5'- cGACugGGAgacggacgggCUGuACGaGGUAGCCa -3'
miRNA:   3'- aCUGugCCUaaa-------GAC-UGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 94821 0.67 0.999176
Target:  5'- gUGGCGCGGAU---UGACaaaagccgGCAGCGggaagcgcGCCa -3'
miRNA:   3'- -ACUGUGCCUAaagACUG--------CGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 127963 0.67 0.999176
Target:  5'- aGcCGCGGGagcagCUGGgGCAGCucgGCCa -3'
miRNA:   3'- aCuGUGCCUaaa--GACUgCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 98263 0.67 0.999176
Target:  5'- gGGCACGGcgagcCUGGCG-GGCGACa -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 223398 0.67 0.999176
Target:  5'- cGACGCGGGccgUgUGGCGCcccggcGCGGCg -3'
miRNA:   3'- aCUGUGCCUaa-AgACUGCGu-----CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 150557 0.67 0.999176
Target:  5'- gUGGUGCGGGUg---GugGCGGCGGCg -3'
miRNA:   3'- -ACUGUGCCUAaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 176914 0.67 0.999176
Target:  5'- uUGACgucaauggGCGGGggUCgUGGgGCGGuCAGCCa -3'
miRNA:   3'- -ACUG--------UGCCUaaAG-ACUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 54969 0.67 0.999176
Target:  5'- -cGCACGGAUgaCaGAuCGCAGCuGCUg -3'
miRNA:   3'- acUGUGCCUAaaGaCU-GCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 109251 0.67 0.999176
Target:  5'- aGACGaaGGUg-CUGACGguGCAgGCCg -3'
miRNA:   3'- aCUGUgcCUAaaGACUGCguCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 28891 0.67 0.999176
Target:  5'- --uCACGGAggUCUacgaGACGCugcGCGACUa -3'
miRNA:   3'- acuGUGCCUaaAGA----CUGCGu--CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 139651 0.67 0.999176
Target:  5'- gGGCGCGGAcgccgUCUgaggagaggGACGCAGaccgcGCCg -3'
miRNA:   3'- aCUGUGCCUaa---AGA---------CUGCGUCgu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 53367 0.67 0.999176
Target:  5'- -aGCACcGucccgCUGACGCGGCGcACCa -3'
miRNA:   3'- acUGUGcCuaaa-GACUGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 105440 0.67 0.998996
Target:  5'- cGGCACGG---UUUGGCGCccgcgGGCGauaACCg -3'
miRNA:   3'- aCUGUGCCuaaAGACUGCG-----UCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 104096 0.67 0.998996
Target:  5'- gGACGCGGAaggC-GGCGC-GCuGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGuCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 47638 0.67 0.998996
Target:  5'- cGugACGGcggcUCUGGCGgCAGCuGCg -3'
miRNA:   3'- aCugUGCCuaa-AGACUGC-GUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 141097 0.67 0.998996
Target:  5'- cGGCugGGugcgCgacGACGCcuGCGACCu -3'
miRNA:   3'- aCUGugCCuaaaGa--CUGCGu-CGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.