miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 4461 0.67 0.998996
Target:  5'- cGAUGCGGcugacggUCUGG-GCGGCGAUCc -3'
miRNA:   3'- aCUGUGCCuaa----AGACUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 141097 0.67 0.998996
Target:  5'- cGGCugGGugcgCgacGACGCcuGCGACCu -3'
miRNA:   3'- aCUGugCCuaaaGa--CUGCGu-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 118664 0.67 0.998996
Target:  5'- aGAUGCGGGgucggcUUCggGAgGCGGCGguACCg -3'
miRNA:   3'- aCUGUGCCUa-----AAGa-CUgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 60326 0.67 0.998996
Target:  5'- ---gACGGcg--CUGAUGCAGcCGGCCa -3'
miRNA:   3'- acugUGCCuaaaGACUGCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44308 0.67 0.998996
Target:  5'- gUGACguACGGGgugCUGAaGCAGguGCUg -3'
miRNA:   3'- -ACUG--UGCCUaaaGACUgCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 92627 0.67 0.998996
Target:  5'- cGACGCuG-UUUCUGGacuCGguGCAGCUg -3'
miRNA:   3'- aCUGUGcCuAAAGACU---GCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 131374 0.67 0.998956
Target:  5'- cGGCAUGGAgUUCgccgaggugacgGGCGuCAGCcugGACCg -3'
miRNA:   3'- aCUGUGCCUaAAGa-----------CUGC-GUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 233003 0.67 0.998784
Target:  5'- cUGGCGcCGGAUggccUUGACGCcguccAGCuGCCg -3'
miRNA:   3'- -ACUGU-GCCUAaa--GACUGCG-----UCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 72178 0.67 0.998784
Target:  5'- cGGCAUGcccucGAUgaccgUGGCGCAGCAGCa -3'
miRNA:   3'- aCUGUGC-----CUAaag--ACUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 213889 0.67 0.998784
Target:  5'- gGGCGCGGAg--CUc-CGCuuguGCAACCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcuGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 100502 0.67 0.998784
Target:  5'- cGACGCGGugg---GACGCcugaAGCGACg -3'
miRNA:   3'- aCUGUGCCuaaagaCUGCG----UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 166632 0.67 0.998639
Target:  5'- cGGCGuCGGGccgCgcgccgggcgccgcGGCGCAGCGGCCa -3'
miRNA:   3'- aCUGU-GCCUaaaGa-------------CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 87197 0.67 0.998535
Target:  5'- aGACGCacccg-CUGGCGCAGgAGCUg -3'
miRNA:   3'- aCUGUGccuaaaGACUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 86409 0.67 0.998535
Target:  5'- cGACGCGGGg----GACGC-GCGugCc -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGuCGUugG- -5'
14007 5' -49.7 NC_003521.1 + 166117 0.67 0.998535
Target:  5'- -aGCAgGGAgccgCUGcCGCGGCGccGCCg -3'
miRNA:   3'- acUGUgCCUaaa-GACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 115796 0.67 0.998535
Target:  5'- -cGCGCGGAUacccgCgGAUGC-GCAGCCu -3'
miRNA:   3'- acUGUGCCUAaa---GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 37410 0.67 0.998535
Target:  5'- -uACACGGGccugaccgUgUGGCGCGGC-GCCg -3'
miRNA:   3'- acUGUGCCUaa------AgACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 25988 0.67 0.998535
Target:  5'- gGGCACGGuga--UGAagcCGCAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaagACU---GCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 74576 0.67 0.998535
Target:  5'- cGGCgACGGAg--CggcGGCGCGGCGuCCc -3'
miRNA:   3'- aCUG-UGCCUaaaGa--CUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 209573 0.67 0.998535
Target:  5'- gGugGCGGGggUCcgggGGCGCAcGUAGCg -3'
miRNA:   3'- aCugUGCCUaaAGa---CUGCGU-CGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.