miRNA display CGI


Results 101 - 120 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 25988 0.67 0.998535
Target:  5'- gGGCACGGuga--UGAagcCGCAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaagACU---GCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 86409 0.67 0.998535
Target:  5'- cGACGCGGGg----GACGC-GCGugCc -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGuCGUugG- -5'
14007 5' -49.7 NC_003521.1 + 37410 0.67 0.998535
Target:  5'- -uACACGGGccugaccgUgUGGCGCGGC-GCCg -3'
miRNA:   3'- acUGUGCCUaa------AgACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 74576 0.67 0.998535
Target:  5'- cGGCgACGGAg--CggcGGCGCGGCGuCCc -3'
miRNA:   3'- aCUG-UGCCUaaaGa--CUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 121615 0.67 0.99848
Target:  5'- cUGGCGCucaccacCUGGCGCAGC-GCCa -3'
miRNA:   3'- -ACUGUGccuaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 160313 0.67 0.99848
Target:  5'- gGGCACGGccaUCggagccgugggcGGCGCGGUGGCCu -3'
miRNA:   3'- aCUGUGCCuaaAGa-----------CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 186656 0.68 0.998244
Target:  5'- -cGCGCGGcgGUggCgGAgGCGGCGGCCu -3'
miRNA:   3'- acUGUGCC--UAaaGaCUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 110335 0.68 0.998244
Target:  5'- aUGACGCGGccgcgCUcGCGguGUAGCUg -3'
miRNA:   3'- -ACUGUGCCuaaa-GAcUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 221895 0.68 0.998244
Target:  5'- gUGGgGCGGAUUgccgGcGCGCGGC-GCCa -3'
miRNA:   3'- -ACUgUGCCUAAaga-C-UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 211395 0.68 0.998244
Target:  5'- aGGCGcCGGc--UCUcgUGCAGCAGCCg -3'
miRNA:   3'- aCUGU-GCCuaaAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109490 0.68 0.998244
Target:  5'- cGGCACGGGg--CgaaGCGCuGCAcgGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGac-UGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 111500 0.68 0.998244
Target:  5'- cUGACcaGCGGg---CUGGCGgCGGCGGCg -3'
miRNA:   3'- -ACUG--UGCCuaaaGACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 119529 0.68 0.998244
Target:  5'- gGGUACGGGUUg-UGcCGCAGCAccACCu -3'
miRNA:   3'- aCUGUGCCUAAagACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 101514 0.68 0.998244
Target:  5'- aGACGCGGccgaccagCaGGCGCuGCAGCUc -3'
miRNA:   3'- aCUGUGCCuaaa----GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 211680 0.68 0.998147
Target:  5'- gGACACGGucugcagcuggugCUgGAUGUAGCAGCg -3'
miRNA:   3'- aCUGUGCCuaaa---------GA-CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 59963 0.68 0.997905
Target:  5'- cGGCGCGGAacaaaUCcgcGACGuCAGCuACCg -3'
miRNA:   3'- aCUGUGCCUaa---AGa--CUGC-GUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 184104 0.68 0.997905
Target:  5'- gUGACGCGGc--UC-GACGUcgacGCGACCa -3'
miRNA:   3'- -ACUGUGCCuaaAGaCUGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 63866 0.68 0.997905
Target:  5'- cUGACACGGuggac-GAgGCGGCGcGCCg -3'
miRNA:   3'- -ACUGUGCCuaaagaCUgCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 88054 0.68 0.997905
Target:  5'- -cGCGCGGAUgaggUCgcgGugGuCGGCGGCg -3'
miRNA:   3'- acUGUGCCUAa---AGa--CugC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153133 0.68 0.997905
Target:  5'- -aACACGGGccUCUcgGGCGCcuccacgcucAGCAACCa -3'
miRNA:   3'- acUGUGCCUaaAGA--CUGCG----------UCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.