miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 26116 0.75 0.906266
Target:  5'- cGACGCGGucUUCUGGCuGCAacGCAACg -3'
miRNA:   3'- aCUGUGCCuaAAGACUG-CGU--CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 28891 0.67 0.999176
Target:  5'- --uCACGGAggUCUacgaGACGCugcGCGACUa -3'
miRNA:   3'- acuGUGCCUaaAGA----CUGCGu--CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 29847 0.66 0.999718
Target:  5'- -uGCACGGAcugUUCacgcccggGACGCAGaagGCCg -3'
miRNA:   3'- acUGUGCCUa--AAGa-------CUGCGUCgu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 30252 0.69 0.995958
Target:  5'- -cGCGCGGuugccgUGGCGCAGCuGACCc -3'
miRNA:   3'- acUGUGCCuaaag-ACUGCGUCG-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 30545 0.69 0.994534
Target:  5'- gGGCACGGuacg--GACGCGcCGGCCa -3'
miRNA:   3'- aCUGUGCCuaaagaCUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 30839 0.69 0.994534
Target:  5'- gGACGCuGGUggccgUCUGGgccgucCGCGGCAACUu -3'
miRNA:   3'- aCUGUGcCUAa----AGACU------GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 31303 0.74 0.918282
Target:  5'- -uGCACGGggUUCUGcgcgagucccuuGCGCAGCAucgcgGCCu -3'
miRNA:   3'- acUGUGCCuaAAGAC------------UGCGUCGU-----UGG- -5'
14007 5' -49.7 NC_003521.1 + 37043 0.66 0.999647
Target:  5'- gGAUACGGugugCgugGACGCcgaaaaccGGCAGCUg -3'
miRNA:   3'- aCUGUGCCuaaaGa--CUGCG--------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 37410 0.67 0.998535
Target:  5'- -uACACGGGccugaccgUgUGGCGCGGC-GCCg -3'
miRNA:   3'- acUGUGCCUaa------AgACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 38444 0.66 0.999498
Target:  5'- gUGACACGGGUgacgaugaaaccgucUgggcUCUGGCGguGgGcGCCg -3'
miRNA:   3'- -ACUGUGCCUA---------------A----AGACUGCguCgU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 38997 0.66 0.999718
Target:  5'- aGGCGCuGGUggaUgUGGCGCuGCAcgGCCg -3'
miRNA:   3'- aCUGUGcCUAa--AgACUGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 42193 0.66 0.999718
Target:  5'- -aGCACGGcGUUUCccugGGC-CAGCGGCUg -3'
miRNA:   3'- acUGUGCC-UAAAGa---CUGcGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 42617 0.67 0.998535
Target:  5'- gUGACgguACGGGccgCUGggaacACGuCAGCAGCCg -3'
miRNA:   3'- -ACUG---UGCCUaaaGAC-----UGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 43478 0.72 0.960327
Target:  5'- -aGCGCGGcggccgugCUGGcCGCGGCGGCCa -3'
miRNA:   3'- acUGUGCCuaaa----GACU-GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 43630 0.67 0.998535
Target:  5'- gGACGaGGAg----GAgGCGGCGGCCg -3'
miRNA:   3'- aCUGUgCCUaaagaCUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44308 0.67 0.998996
Target:  5'- gUGACguACGGGgugCUGAaGCAGguGCUg -3'
miRNA:   3'- -ACUG--UGCCUaaaGACUgCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 44374 0.71 0.9781
Target:  5'- ---aGCGGAggUUC--GCGCGGCAGCCg -3'
miRNA:   3'- acugUGCCUa-AAGacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44891 0.69 0.992729
Target:  5'- aGAUccaACGGAUcUCagacGGCGCGGCGGCg -3'
miRNA:   3'- aCUG---UGCCUAaAGa---CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 46287 0.66 0.999559
Target:  5'- cGACGCGGcagacagUUCgauCGCAGCGaaucuaugacgGCCa -3'
miRNA:   3'- aCUGUGCCua-----AAGacuGCGUCGU-----------UGG- -5'
14007 5' -49.7 NC_003521.1 + 46390 0.66 0.999454
Target:  5'- gGGCGCGGGgugCguggGGCGC-GCgGGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGa---CUGCGuCG-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.