miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 47638 0.67 0.998996
Target:  5'- cGugACGGcggcUCUGGCGgCAGCuGCg -3'
miRNA:   3'- aCugUGCCuaa-AGACUGC-GUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 49618 0.69 0.995958
Target:  5'- gGACGCGGAg----GACaCGGCGACg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 49889 0.68 0.997063
Target:  5'- cGugGCGugcgUgUGGCGaCGGCAGCCa -3'
miRNA:   3'- aCugUGCcuaaAgACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 50734 0.68 0.997514
Target:  5'- aGGCAUGucg-UC-GGCGCAGCAGCg -3'
miRNA:   3'- aCUGUGCcuaaAGaCUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 53367 0.67 0.999176
Target:  5'- -aGCACcGucccgCUGACGCGGCGcACCa -3'
miRNA:   3'- acUGUGcCuaaa-GACUGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 54425 0.67 0.999327
Target:  5'- uUGACGCcguGGAag-CUGACGCGGUuguuGGCg -3'
miRNA:   3'- -ACUGUG---CCUaaaGACUGCGUCG----UUGg -5'
14007 5' -49.7 NC_003521.1 + 54969 0.67 0.999176
Target:  5'- -cGCACGGAUgaCaGAuCGCAGCuGCUg -3'
miRNA:   3'- acUGUGCCUAaaGaCU-GCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 55520 0.66 0.999559
Target:  5'- uUGAcCACGGGUac---GCGCAGCGagcGCCg -3'
miRNA:   3'- -ACU-GUGCCUAaagacUGCGUCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 57036 0.68 0.997868
Target:  5'- cGAUccggACGGAUUUCggGACcgucgcagcaguaGCAGCGGCg -3'
miRNA:   3'- aCUG----UGCCUAAAGa-CUG-------------CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 58705 0.69 0.995958
Target:  5'- cGAgACGGcc--UUGACGCAGCccACCg -3'
miRNA:   3'- aCUgUGCCuaaaGACUGCGUCGu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 59443 0.71 0.975648
Target:  5'- gGACACGG---UCUGGCGCuacaGGCuguCCg -3'
miRNA:   3'- aCUGUGCCuaaAGACUGCG----UCGuu-GG- -5'
14007 5' -49.7 NC_003521.1 + 59963 0.68 0.997905
Target:  5'- cGGCGCGGAacaaaUCcgcGACGuCAGCuACCg -3'
miRNA:   3'- aCUGUGCCUaa---AGa--CUGC-GUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 60326 0.67 0.998996
Target:  5'- ---gACGGcg--CUGAUGCAGcCGGCCa -3'
miRNA:   3'- acugUGCCuaaaGACUGCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 63866 0.68 0.997905
Target:  5'- cUGACACGGuggac-GAgGCGGCGcGCCg -3'
miRNA:   3'- -ACUGUGCCuaaagaCUgCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 63952 0.7 0.986116
Target:  5'- cUGAgCGUGGAgcugCUGGCGCGGC-GCCa -3'
miRNA:   3'- -ACU-GUGCCUaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 64590 0.69 0.994534
Target:  5'- cGACAUGGugaagcggCUGGCGCGGgacgacacgcuuCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaa----GACUGCGUC------------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 65296 0.66 0.999454
Target:  5'- -uGCugGGGgcgCUGuCGCAGCu-CCg -3'
miRNA:   3'- acUGugCCUaaaGACuGCGUCGuuGG- -5'
14007 5' -49.7 NC_003521.1 + 65444 0.7 0.989164
Target:  5'- gGuCAUGGGUccccgUCUGAUGCAGgaGACCc -3'
miRNA:   3'- aCuGUGCCUAa----AGACUGCGUCg-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 65626 0.66 0.999647
Target:  5'- cGGCcCGcGAggagCUGACGCGcGcCAGCCa -3'
miRNA:   3'- aCUGuGC-CUaaa-GACUGCGU-C-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 66509 0.68 0.996378
Target:  5'- gGGC-UGGAUUUCaaGGCGCAGCuggacaagaucgccGACCu -3'
miRNA:   3'- aCUGuGCCUAAAGa-CUGCGUCG--------------UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.