miRNA display CGI


Results 61 - 80 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 66869 0.67 0.999327
Target:  5'- gGGCACGGuga-CUGugGCcgaGACCa -3'
miRNA:   3'- aCUGUGCCuaaaGACugCGucgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 68236 0.69 0.99529
Target:  5'- aGGaGCGGuacgUUCaccUGGCGguGCGACCg -3'
miRNA:   3'- aCUgUGCCua--AAG---ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 68532 0.69 0.995958
Target:  5'- cGACAcCGGAc----GGCgGCAGCGGCCg -3'
miRNA:   3'- aCUGU-GCCUaaagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 69689 0.7 0.987092
Target:  5'- gGugACGGugguccuggugUCgGugGCGGCGGCCc -3'
miRNA:   3'- aCugUGCCuaa--------AGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 72178 0.67 0.998784
Target:  5'- cGGCAUGcccucGAUgaccgUGGCGCAGCAGCa -3'
miRNA:   3'- aCUGUGC-----CUAaag--ACUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 73181 0.73 0.939382
Target:  5'- gGACGCGGAg--CUGGC-CGGCAucgacgugACCg -3'
miRNA:   3'- aCUGUGCCUaaaGACUGcGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 74149 0.69 0.995958
Target:  5'- cGAgACGGGaugCUGuCGCAGCucauCCg -3'
miRNA:   3'- aCUgUGCCUaaaGACuGCGUCGuu--GG- -5'
14007 5' -49.7 NC_003521.1 + 74576 0.67 0.998535
Target:  5'- cGGCgACGGAg--CggcGGCGCGGCGuCCc -3'
miRNA:   3'- aCUG-UGCCUaaaGa--CUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 76204 0.66 0.999454
Target:  5'- cGGuCGCGGuggugguaUgaGugGCGGCGGCCg -3'
miRNA:   3'- aCU-GUGCCuaa-----AgaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 76312 0.69 0.992729
Target:  5'- cGGCAgCGGAg----GugGCGGCGACa -3'
miRNA:   3'- aCUGU-GCCUaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 77483 0.67 0.999327
Target:  5'- aUGAgGCGGGgaUCc--CGCAGCAuACCg -3'
miRNA:   3'- -ACUgUGCCUaaAGacuGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 77710 0.75 0.893288
Target:  5'- cGugGCGGcgUUgUUGGCGaCGGCGGCCu -3'
miRNA:   3'- aCugUGCCuaAA-GACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 78523 0.7 0.988743
Target:  5'- cGACGCGGAUUcCgcggacucccggcgUGACGguGCAgagGCUg -3'
miRNA:   3'- aCUGUGCCUAAaG--------------ACUGCguCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 78652 0.65 0.999772
Target:  5'- aUGACGaugucguCGGGcUUCUcGGCGCAGgggaAGCCg -3'
miRNA:   3'- -ACUGU-------GCCUaAAGA-CUGCGUCg---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 80970 0.66 0.999454
Target:  5'- aUGACgACGGGgcgCgaguaGCAGCGGCCc -3'
miRNA:   3'- -ACUG-UGCCUaaaGacug-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 84701 0.7 0.991663
Target:  5'- cGACG-GGGUUUCUGACG-GGCGAg- -3'
miRNA:   3'- aCUGUgCCUAAAGACUGCgUCGUUgg -5'
14007 5' -49.7 NC_003521.1 + 84728 0.69 0.994205
Target:  5'- aGACGCGGGcacugccgUCgucgucuugcucgGGCGCGGCGGCg -3'
miRNA:   3'- aCUGUGCCUaa------AGa------------CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 84821 0.71 0.980365
Target:  5'- cGAUACGGGcagCUcGCGCAGC-GCCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 86263 0.69 0.99529
Target:  5'- -cGCGCuGAggUUCUG-CGCGGCGAUCa -3'
miRNA:   3'- acUGUGcCUa-AAGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 86409 0.67 0.998535
Target:  5'- cGACGCGGGg----GACGC-GCGugCc -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGuCGUugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.