miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 87197 0.67 0.998535
Target:  5'- aGACGCacccg-CUGGCGCAGgAGCUg -3'
miRNA:   3'- aCUGUGccuaaaGACUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 88054 0.68 0.997905
Target:  5'- -cGCGCGGAUgaggUCgcgGugGuCGGCGGCg -3'
miRNA:   3'- acUGUGCCUAa---AGa--CugC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 88323 0.75 0.893288
Target:  5'- gGAUGCGGGUcUCgccgaaGCGCAGCGACUg -3'
miRNA:   3'- aCUGUGCCUAaAGac----UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 89736 0.68 0.997063
Target:  5'- gGGCACGGGggcggUGACG--GCAGCCg -3'
miRNA:   3'- aCUGUGCCUaaag-ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 90192 0.67 0.998535
Target:  5'- -cGCACGcccccgcCUG-CGCAGCAGCCg -3'
miRNA:   3'- acUGUGCcuaaa--GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 91573 0.74 0.918282
Target:  5'- cGACAUGGccacgUCguaGGCGUAGUAGCCg -3'
miRNA:   3'- aCUGUGCCuaa--AGa--CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 91858 0.68 0.997063
Target:  5'- aGcACGCGGAUga-UGGCGCugcccuccAGCAGCa -3'
miRNA:   3'- aC-UGUGCCUAaagACUGCG--------UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 92103 0.69 0.996203
Target:  5'- gGGCACGGAggccUCgagGAUGCcguaccagcugagguGGCAGCUg -3'
miRNA:   3'- aCUGUGCCUaa--AGa--CUGCG---------------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 92304 0.68 0.997063
Target:  5'- aGGCGCGGGagga-GGCGCAGCcGCg -3'
miRNA:   3'- aCUGUGCCUaaagaCUGCGUCGuUGg -5'
14007 5' -49.7 NC_003521.1 + 92627 0.67 0.998996
Target:  5'- cGACGCuG-UUUCUGGacuCGguGCAGCUg -3'
miRNA:   3'- aCUGUGcCuAAAGACU---GCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 93902 0.71 0.975648
Target:  5'- gGGCAUGGGcguggCUGGuCGCGGCAAgCg -3'
miRNA:   3'- aCUGUGCCUaaa--GACU-GCGUCGUUgG- -5'
14007 5' -49.7 NC_003521.1 + 94411 0.7 0.991663
Target:  5'- -cGCGCaGGU---UGACGCGGCGGCCc -3'
miRNA:   3'- acUGUGcCUAaagACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 94821 0.67 0.999176
Target:  5'- gUGGCGCGGAU---UGACaaaagccgGCAGCGggaagcgcGCCa -3'
miRNA:   3'- -ACUGUGCCUAaagACUG--------CGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 95211 0.68 0.997514
Target:  5'- cGGCAcCGGGUgc--GACuGCAGCAGCg -3'
miRNA:   3'- aCUGU-GCCUAaagaCUG-CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 98129 0.66 0.999718
Target:  5'- cGGCAgCGGAg-UCcGugGUAGCugcuGCCg -3'
miRNA:   3'- aCUGU-GCCUaaAGaCugCGUCGu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 98263 0.67 0.999176
Target:  5'- gGGCACGGcgagcCUGGCG-GGCGACa -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 98406 0.66 0.999712
Target:  5'- cGACGCuGGUgg-UGACGUuggccagGGCGGCCa -3'
miRNA:   3'- aCUGUGcCUAaagACUGCG-------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 98478 0.68 0.996547
Target:  5'- cGGcCGCGGcgg-CcGugGCGGCGGCCu -3'
miRNA:   3'- aCU-GUGCCuaaaGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 99788 0.71 0.984364
Target:  5'- aGGCcCGGGgugucacCUGGCGCAGUAcgGCCu -3'
miRNA:   3'- aCUGuGCCUaaa----GACUGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 100004 0.66 0.999454
Target:  5'- cGGCGaaGAUcUUCUccaccaccagacGACGCAGCAGCg -3'
miRNA:   3'- aCUGUgcCUA-AAGA------------CUGCGUCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.