miRNA display CGI


Results 101 - 120 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 100074 0.74 0.923924
Target:  5'- cGGCACGGAgg-CgGGCGCcuCGACCg -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 100502 0.67 0.998784
Target:  5'- cGACGCGGugg---GACGCcugaAGCGACg -3'
miRNA:   3'- aCUGUGCCuaaagaCUGCG----UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 101482 0.68 0.997063
Target:  5'- gUGGCGCGuGAggugCUcGAgcaGCGGCGGCCa -3'
miRNA:   3'- -ACUGUGC-CUaaa-GA-CUg--CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 101514 0.68 0.998244
Target:  5'- aGACGCGGccgaccagCaGGCGCuGCAGCUc -3'
miRNA:   3'- aCUGUGCCuaaa----GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 102774 0.66 0.99954
Target:  5'- cGGCAgCGGcugcgcgaUGACGCgccGGCGGCCg -3'
miRNA:   3'- aCUGU-GCCuaaag---ACUGCG---UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 102967 0.79 0.720259
Target:  5'- gGGCGuCGGGgcUCUGGCGgGGCGGCCc -3'
miRNA:   3'- aCUGU-GCCUaaAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 103111 0.66 0.999559
Target:  5'- gUGGCAgGcGAagagCUGGCGCAGCGcGCg -3'
miRNA:   3'- -ACUGUgC-CUaaa-GACUGCGUCGU-UGg -5'
14007 5' -49.7 NC_003521.1 + 103212 0.66 0.999647
Target:  5'- aUGACcUGGAUgaggUCgccGGCcagGCGGCGGCCc -3'
miRNA:   3'- -ACUGuGCCUAa---AGa--CUG---CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 103508 0.69 0.994534
Target:  5'- gUGAacuCGGGg-UCgccGCGCAGCAGCCg -3'
miRNA:   3'- -ACUgu-GCCUaaAGac-UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 104096 0.67 0.998996
Target:  5'- gGACGCGGAaggC-GGCGC-GCuGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGuCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 105440 0.67 0.998996
Target:  5'- cGGCACGG---UUUGGCGCccgcgGGCGauaACCg -3'
miRNA:   3'- aCUGUGCCuaaAGACUGCG-----UCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 105946 0.7 0.991204
Target:  5'- cGGCGCGGAUga-UGaccgugugucggguGCGCAGCGugaagaaGCCg -3'
miRNA:   3'- aCUGUGCCUAaagAC--------------UGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 106112 0.66 0.99955
Target:  5'- gGGCACGG-------GCGUGGCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 106881 0.68 0.997831
Target:  5'- gGugACGGuaguagcGGCGCAGCGccACCa -3'
miRNA:   3'- aCugUGCCuaaaga-CUGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 107319 0.67 0.999327
Target:  5'- cGcCGCGGGUUg--GGCcccGCAGCAGCg -3'
miRNA:   3'- aCuGUGCCUAAagaCUG---CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 108335 0.73 0.952656
Target:  5'- -uGCACGGGUcUCUGG-GCcGCAACCu -3'
miRNA:   3'- acUGUGCCUAaAGACUgCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109251 0.67 0.999176
Target:  5'- aGACGaaGGUg-CUGACGguGCAgGCCg -3'
miRNA:   3'- aCUGUgcCUAaaGACUGCguCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 109327 0.68 0.996547
Target:  5'- gGGCAgGcGGUUga-GGCgGCAGCAGCCg -3'
miRNA:   3'- aCUGUgC-CUAAagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109490 0.68 0.998244
Target:  5'- cGGCACGGGg--CgaaGCGCuGCAcgGCCa -3'
miRNA:   3'- aCUGUGCCUaaaGac-UGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 109655 0.73 0.952656
Target:  5'- aGACGCGaGAUgaugCaGACGUAGCGGCg -3'
miRNA:   3'- aCUGUGC-CUAaa--GaCUGCGUCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.