miRNA display CGI


Results 121 - 140 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 110335 0.68 0.998244
Target:  5'- aUGACGCGGccgcgCUcGCGguGUAGCUg -3'
miRNA:   3'- -ACUGUGCCuaaa-GAcUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 110519 0.66 0.999559
Target:  5'- gGACcUGGAUgcgcGGCGCcGCGGCCu -3'
miRNA:   3'- aCUGuGCCUAaagaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 111247 0.72 0.973001
Target:  5'- cGGCGCGGcg--C-GGCGgAGCAGCCa -3'
miRNA:   3'- aCUGUGCCuaaaGaCUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 111348 0.74 0.934474
Target:  5'- --cCGCGGAcUUUCUGACGCAcGUgaaAACCa -3'
miRNA:   3'- acuGUGCCU-AAAGACUGCGU-CG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 111500 0.68 0.998244
Target:  5'- cUGACcaGCGGg---CUGGCGgCGGCGGCg -3'
miRNA:   3'- -ACUG--UGCCuaaaGACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 113869 0.69 0.995958
Target:  5'- cGGCGCGGGUUc----CGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCUAAagacuGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 113954 0.69 0.993772
Target:  5'- cGACACGGAggaggcagacaGACGgcaGGCGGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga------CUGCg--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 114032 0.7 0.990478
Target:  5'- -cGCGCGGAg--CUGgaccacGCGCAGC-GCCa -3'
miRNA:   3'- acUGUGCCUaaaGAC------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 114774 0.75 0.893959
Target:  5'- gGACACGGAgaccaucuccaugCUGACGUucGGCAGCa -3'
miRNA:   3'- aCUGUGCCUaaa----------GACUGCG--UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 114934 0.67 0.999327
Target:  5'- cGGCugcUGGAgagCUGcucGCGCAGCGGCg -3'
miRNA:   3'- aCUGu--GCCUaaaGAC---UGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 114960 0.66 0.999442
Target:  5'- cGACACGGA-------CGCGGCcACCa -3'
miRNA:   3'- aCUGUGCCUaaagacuGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 115260 0.66 0.999725
Target:  5'- gGGCACGGAacaacugaUcgaaaacccgugccgUCUGACGCAGgAAgCg -3'
miRNA:   3'- aCUGUGCCU--------Aa--------------AGACUGCGUCgUUgG- -5'
14007 5' -49.7 NC_003521.1 + 115539 0.73 0.956607
Target:  5'- cGACGCGGcucgcCUGACGgAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 115796 0.67 0.998535
Target:  5'- -cGCGCGGAUacccgCgGAUGC-GCAGCCu -3'
miRNA:   3'- acUGUGCCUAaa---GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 115821 0.66 0.999677
Target:  5'- aGGCGCGGGUggcucagcaggcgCUGGCucaggcggGCGGCGcacGCCu -3'
miRNA:   3'- aCUGUGCCUAaa-----------GACUG--------CGUCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 116344 0.7 0.991663
Target:  5'- cUGACGCGGAcggaccgCgaGCGCGGCGGCg -3'
miRNA:   3'- -ACUGUGCCUaaa----GacUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 117308 0.8 0.68984
Target:  5'- cGACGCGGAUUgcgGGCGgCAGCGGCg -3'
miRNA:   3'- aCUGUGCCUAAagaCUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 117357 0.81 0.638279
Target:  5'- gGACACGGAg--CUGACGCc-CAGCCu -3'
miRNA:   3'- aCUGUGCCUaaaGACUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 118664 0.67 0.998996
Target:  5'- aGAUGCGGGgucggcUUCggGAgGCGGCGguACCg -3'
miRNA:   3'- aCUGUGCCUa-----AAGa-CUgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 119529 0.68 0.998244
Target:  5'- gGGUACGGGUUg-UGcCGCAGCAccACCu -3'
miRNA:   3'- aCUGUGCCUAAagACuGCGUCGU--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.