miRNA display CGI


Results 1 - 20 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 239225 0.66 0.999718
Target:  5'- aGGCGCuGGUggaUgUGGCGCuGCAcgGCCg -3'
miRNA:   3'- aCUGUGcCUAa--AgACUGCGuCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 233003 0.67 0.998784
Target:  5'- cUGGCGcCGGAUggccUUGACGCcguccAGCuGCCg -3'
miRNA:   3'- -ACUGU-GCCUAaa--GACUGCG-----UCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 230408 0.72 0.970152
Target:  5'- cGACACGcGGUUUUUGagauGCGgGGCGACg -3'
miRNA:   3'- aCUGUGC-CUAAAGAC----UGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 227862 0.69 0.995218
Target:  5'- aGACugGGAUUcaugaggUCccGACGCGGgAugCg -3'
miRNA:   3'- aCUGugCCUAA-------AGa-CUGCGUCgUugG- -5'
14007 5' -49.7 NC_003521.1 + 225566 0.68 0.99632
Target:  5'- aGACGgGGAcccgugucgucCUGGCGCucGGCGGCCu -3'
miRNA:   3'- aCUGUgCCUaaa--------GACUGCG--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 224436 0.73 0.952656
Target:  5'- gGACGCGGAcacaUGAaggggaGCAGCAGCUu -3'
miRNA:   3'- aCUGUGCCUaaagACUg-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 223398 0.67 0.999176
Target:  5'- cGACGCGGGccgUgUGGCGCcccggcGCGGCg -3'
miRNA:   3'- aCUGUGCCUaa-AgACUGCGu-----CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 221895 0.68 0.998244
Target:  5'- gUGGgGCGGAUUgccgGcGCGCGGC-GCCa -3'
miRNA:   3'- -ACUgUGCCUAAaga-C-UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 218456 0.65 0.999772
Target:  5'- gGACAUGGccggcaccacgccGUg---GGCGCAGUGGCCc -3'
miRNA:   3'- aCUGUGCC-------------UAaagaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 218218 0.67 0.999327
Target:  5'- gGGCaACGGAggUCaggcGAcCGCAGgGGCCg -3'
miRNA:   3'- aCUG-UGCCUaaAGa---CU-GCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 217108 0.7 0.989164
Target:  5'- cGACAUGGGUUg--GACGUAGauGCCc -3'
miRNA:   3'- aCUGUGCCUAAagaCUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 216912 0.66 0.999647
Target:  5'- gGGCGCGGuggcagCgGAgGCGGuCGACCc -3'
miRNA:   3'- aCUGUGCCuaaa--GaCUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 216208 0.67 0.999327
Target:  5'- cGGCGCGGGguccucCUGgcacACGCAGacgaGGCCu -3'
miRNA:   3'- aCUGUGCCUaaa---GAC----UGCGUCg---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 216126 0.68 0.997471
Target:  5'- cGGCGCGGAg----GcCGCGGCAgaggaagGCCa -3'
miRNA:   3'- aCUGUGCCUaaagaCuGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 215344 0.67 0.999313
Target:  5'- cGACACcuugggugggugGGAcUUCUcGGCGCAGUAgaggcagaggacgGCCa -3'
miRNA:   3'- aCUGUG------------CCUaAAGA-CUGCGUCGU-------------UGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213955 0.71 0.980365
Target:  5'- aGACGCGGGUg---GGCGcCGGCucggGCCg -3'
miRNA:   3'- aCUGUGCCUAaagaCUGC-GUCGu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 213889 0.67 0.998784
Target:  5'- gGGCGCGGAg--CUc-CGCuuguGCAACCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcuGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213307 0.66 0.999442
Target:  5'- gGugACGGAcaUCaugaugaagaggaUGGCGCcGUAGCCg -3'
miRNA:   3'- aCugUGCCUaaAG-------------ACUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 212232 0.69 0.994534
Target:  5'- gGugGCGGu------GCGCAGCAGCCc -3'
miRNA:   3'- aCugUGCCuaaagacUGCGUCGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.