miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 211680 0.68 0.998147
Target:  5'- gGACACGGucugcagcuggugCUgGAUGUAGCAGCg -3'
miRNA:   3'- aCUGUGCCuaaa---------GA-CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 211395 0.68 0.998244
Target:  5'- aGGCGcCGGc--UCUcgUGCAGCAGCCg -3'
miRNA:   3'- aCUGU-GCCuaaAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 211343 0.71 0.98245
Target:  5'- gGGCGCGaGUggUUGGgguccCGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCcUAaaGACU-----GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 210802 0.74 0.934474
Target:  5'- gGACACGGAacagUUCUGuucCGaCAGCGGuCCg -3'
miRNA:   3'- aCUGUGCCUa---AAGACu--GC-GUCGUU-GG- -5'
14007 5' -49.7 NC_003521.1 + 210029 0.72 0.967094
Target:  5'- gGACACGGAgcUCUGcACaCGGUAACg -3'
miRNA:   3'- aCUGUGCCUaaAGAC-UGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 209573 0.67 0.998535
Target:  5'- gGugGCGGGggUCcgggGGCGCAcGUAGCg -3'
miRNA:   3'- aCugUGCCUaaAGa---CUGCGU-CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 208940 0.66 0.999559
Target:  5'- gUGcCGCGGc---CUGGCGguGCGguACCg -3'
miRNA:   3'- -ACuGUGCCuaaaGACUGCguCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 206990 0.66 0.999712
Target:  5'- aUGACgccccagGCGGGUccUUCgcaGACGCAGUuGCUc -3'
miRNA:   3'- -ACUG-------UGCCUA--AAGa--CUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 202733 0.73 0.952656
Target:  5'- uUGACGCGGcagg--GGCGCGGgGACCc -3'
miRNA:   3'- -ACUGUGCCuaaagaCUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 202097 0.66 0.999749
Target:  5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3'
miRNA:   3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 198089 0.73 0.939382
Target:  5'- uUGugGgGGGcgUCUGACGguGCuGCCc -3'
miRNA:   3'- -ACugUgCCUaaAGACUGCguCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 197608 0.66 0.999647
Target:  5'- ---uGCGGcg-UCUGGUGCAGCAgGCCg -3'
miRNA:   3'- acugUGCCuaaAGACUGCGUCGU-UGG- -5'
14007 5' -49.7 NC_003521.1 + 196248 0.75 0.906266
Target:  5'- cUGGCGCGG-UUUCUGugGUuccGGguACCc -3'
miRNA:   3'- -ACUGUGCCuAAAGACugCG---UCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 193261 0.66 0.999559
Target:  5'- gGAUACGGucggCUGcggaGCGGguGCCg -3'
miRNA:   3'- aCUGUGCCuaaaGACug--CGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 193155 0.72 0.967094
Target:  5'- aUGGCGgGGGcgUCUGcugcugcuguuGCGCAGCuGCCg -3'
miRNA:   3'- -ACUGUgCCUaaAGAC-----------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 192789 0.71 0.9781
Target:  5'- cGGCACGGGcuugcccuugUCgGAUcgcugGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCCUaa--------AGaCUG-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 191657 0.68 0.996762
Target:  5'- cGuCACGGAUcagccccaGCAGCAGCCg -3'
miRNA:   3'- aCuGUGCCUAaagacug-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 191056 0.73 0.939382
Target:  5'- cGACGCucagUUCUGuuccCGCGGCGACCg -3'
miRNA:   3'- aCUGUGccuaAAGACu---GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 189157 1.12 0.012136
Target:  5'- cUGACACGGAUUUCUGACGCAGCAACCc -3'
miRNA:   3'- -ACUGUGCCUAAAGACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 186656 0.68 0.998244
Target:  5'- -cGCGCGGcgGUggCgGAgGCGGCGGCCu -3'
miRNA:   3'- acUGUGCC--UAaaGaCUgCGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.