miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 184104 0.68 0.997905
Target:  5'- gUGACGCGGc--UC-GACGUcgacGCGACCa -3'
miRNA:   3'- -ACUGUGCCuaaAGaCUGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 180066 0.71 0.984364
Target:  5'- cGGCGgGGA-UUCUccCGCGGCGACUg -3'
miRNA:   3'- aCUGUgCCUaAAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 179237 0.69 0.996203
Target:  5'- cGcCGCGGGccUUCUGGCGCcugaacucgccggccAGCAGCg -3'
miRNA:   3'- aCuGUGCCUa-AAGACUGCG---------------UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 176914 0.67 0.999176
Target:  5'- uUGACgucaauggGCGGGggUCgUGGgGCGGuCAGCCa -3'
miRNA:   3'- -ACUG--------UGCCUaaAG-ACUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 174817 0.71 0.98245
Target:  5'- -cACACGGggUUCUccaGCAGCGACUu -3'
miRNA:   3'- acUGUGCCuaAAGAcugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 173517 0.71 0.980147
Target:  5'- aUGACGaugcagaacucguCGGGcgUCaGGCGCAGCGGCUg -3'
miRNA:   3'- -ACUGU-------------GCCUaaAGaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 172807 0.66 0.999454
Target:  5'- cGugGCGGugaggCUcACGCAGCugggGGCCg -3'
miRNA:   3'- aCugUGCCuaaa-GAcUGCGUCG----UUGG- -5'
14007 5' -49.7 NC_003521.1 + 172648 0.7 0.990478
Target:  5'- -cGCACGGAUgacguagguaCUGGCGCAgacGCAGCa -3'
miRNA:   3'- acUGUGCCUAaa--------GACUGCGU---CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 172386 0.68 0.997514
Target:  5'- cGGCACGcGGUUgaggGGCGCcGGCGgaGCCg -3'
miRNA:   3'- aCUGUGC-CUAAaga-CUGCG-UCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 172350 0.72 0.970152
Target:  5'- gGGCgGCGGG-UUCUGACGCAGaaagucgaugcUGACCg -3'
miRNA:   3'- aCUG-UGCCUaAAGACUGCGUC-----------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 170949 0.71 0.98245
Target:  5'- aUGGcCugGGcgUggcgCUG-CGCGGCGGCCu -3'
miRNA:   3'- -ACU-GugCCuaAa---GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 170878 0.66 0.999647
Target:  5'- gGGCGCGGGUggUCaGGCGUccggcgucgcgaAGCAGgCg -3'
miRNA:   3'- aCUGUGCCUAa-AGaCUGCG------------UCGUUgG- -5'
14007 5' -49.7 NC_003521.1 + 169541 0.68 0.996547
Target:  5'- uUGAgAUGGAagagaaaCUGcCGCAGCAGCUc -3'
miRNA:   3'- -ACUgUGCCUaaa----GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166804 0.67 0.998996
Target:  5'- gUGACGCGGcgguagagCUcGCGCAGUA-CCa -3'
miRNA:   3'- -ACUGUGCCuaaa----GAcUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 166632 0.67 0.998639
Target:  5'- cGGCGuCGGGccgCgcgccgggcgccgcGGCGCAGCGGCCa -3'
miRNA:   3'- aCUGU-GCCUaaaGa-------------CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166216 0.66 0.999718
Target:  5'- uUGGCGCGGcgg-CgaGGCGCGcCGGCCg -3'
miRNA:   3'- -ACUGUGCCuaaaGa-CUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 166117 0.67 0.998535
Target:  5'- -aGCAgGGAgccgCUGcCGCGGCGccGCCg -3'
miRNA:   3'- acUGUgCCUaaa-GACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 165636 0.66 0.999718
Target:  5'- gUGaACACGGug--UUGA-GCAGCAGCa -3'
miRNA:   3'- -AC-UGUGCCuaaaGACUgCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 165262 0.74 0.923924
Target:  5'- gGACA-GGAgggcgCUGGCGUAGCcGCCg -3'
miRNA:   3'- aCUGUgCCUaaa--GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 164792 0.66 0.999718
Target:  5'- gGGCACGGGUcgUCgggGACGaucccggAGCGcCCg -3'
miRNA:   3'- aCUGUGCCUAa-AGa--CUGCg------UCGUuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.