miRNA display CGI


Results 61 - 80 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 164270 0.71 0.983995
Target:  5'- aGGCGCGGAccgccgcucCUGGacagccaccgcaGCAGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaa------GACUg-----------CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 163193 0.72 0.970152
Target:  5'- gGACACGGug----GugGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCuaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 160506 0.66 0.999647
Target:  5'- aGACcgcgGCGGGaggagGGgGCGGCAGCCu -3'
miRNA:   3'- aCUG----UGCCUaaagaCUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 160313 0.67 0.99848
Target:  5'- gGGCACGGccaUCggagccgugggcGGCGCGGUGGCCu -3'
miRNA:   3'- aCUGUGCCuaaAGa-----------CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 155615 0.69 0.992729
Target:  5'- cGGCGCGGcgccgggUGACGCAgugucguacGCGACCg -3'
miRNA:   3'- aCUGUGCCuaaag--ACUGCGU---------CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 155573 0.66 0.999718
Target:  5'- cGGCGCaGGAgg--UGGUGCAGCAGCa -3'
miRNA:   3'- aCUGUG-CCUaaagACUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 155164 0.66 0.999718
Target:  5'- cGGCuCGGAacagCUGGCggccGCGGCuGCCg -3'
miRNA:   3'- aCUGuGCCUaaa-GACUG----CGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 153594 0.7 0.990478
Target:  5'- gGACACGGucaacgUCagcgGGCGgAGCGACUu -3'
miRNA:   3'- aCUGUGCCuaa---AGa---CUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 153482 0.67 0.999327
Target:  5'- -cACGCGGAUgcccUUGccGCGCAGCugcGCCu -3'
miRNA:   3'- acUGUGCCUAaa--GAC--UGCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 153133 0.68 0.997905
Target:  5'- -aACACGGGccUCUcgGGCGCcuccacgcucAGCAACCa -3'
miRNA:   3'- acUGUGCCUaaAGA--CUGCG----------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 151074 0.69 0.994534
Target:  5'- -cGCGCGGGUUUCUGGacCGC--CGACCc -3'
miRNA:   3'- acUGUGCCUAAAGACU--GCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 150842 0.77 0.797265
Target:  5'- cGACGUGGAUUUCUGGCuguuGCAGUuccAGCCg -3'
miRNA:   3'- aCUGUGCCUAAAGACUG----CGUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 150557 0.67 0.999176
Target:  5'- gUGGUGCGGGUg---GugGCGGCGGCg -3'
miRNA:   3'- -ACUGUGCCUAaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 148802 0.73 0.939382
Target:  5'- cGGCuGCGGAcgUUCaucguGCGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUa-AAGac---UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 148552 0.68 0.997514
Target:  5'- gGACGCGG---UUUGaACGCGucgacGCGACCg -3'
miRNA:   3'- aCUGUGCCuaaAGAC-UGCGU-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 145582 0.66 0.999559
Target:  5'- ---uGCGGcggcacGACGCGGCGGCCg -3'
miRNA:   3'- acugUGCCuaaagaCUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 141378 0.75 0.893288
Target:  5'- gUGACGCGGugcccgaUGACGaCAGCAACg -3'
miRNA:   3'- -ACUGUGCCuaaag--ACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 141097 0.67 0.998996
Target:  5'- cGGCugGGugcgCgacGACGCcuGCGACCu -3'
miRNA:   3'- aCUGugCCuaaaGa--CUGCGu-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 139651 0.67 0.999176
Target:  5'- gGGCGCGGAcgccgUCUgaggagaggGACGCAGaccgcGCCg -3'
miRNA:   3'- aCUGUGCCUaa---AGA---------CUGCGUCgu---UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.