miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 139500 0.73 0.939382
Target:  5'- aGACACGuGUUUCUGguGCGCcacGUAGCCg -3'
miRNA:   3'- aCUGUGCcUAAAGAC--UGCGu--CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 138712 0.66 0.999454
Target:  5'- cGGCACGGGcgcuggCUGGUGguGCGuCCg -3'
miRNA:   3'- aCUGUGCCUaaa---GACUGCguCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 138043 0.66 0.999718
Target:  5'- -cGCACGGGg--CUGuggguCGCccGCGACCg -3'
miRNA:   3'- acUGUGCCUaaaGACu----GCGu-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 137306 0.8 0.6693
Target:  5'- gUGGCGCGGcug-CUG-CGCGGCGACCc -3'
miRNA:   3'- -ACUGUGCCuaaaGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 136941 0.68 0.997063
Target:  5'- gUGACugGGAguucCUGGCaC-GCGACCu -3'
miRNA:   3'- -ACUGugCCUaaa-GACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 136399 0.66 0.999454
Target:  5'- cGGcCGCGGGccgcgUgUGAgGCAGaCAGCCg -3'
miRNA:   3'- aCU-GUGCCUaa---AgACUgCGUC-GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 135475 0.67 0.999327
Target:  5'- cGACGCGGAcgcagUGGCGC-GCAcauaaaACCg -3'
miRNA:   3'- aCUGUGCCUaaag-ACUGCGuCGU------UGG- -5'
14007 5' -49.7 NC_003521.1 + 131374 0.67 0.998956
Target:  5'- cGGCAUGGAgUUCgccgaggugacgGGCGuCAGCcugGACCg -3'
miRNA:   3'- aCUGUGCCUaAAGa-----------CUGC-GUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 131105 0.69 0.994534
Target:  5'- gGACgGCGGGg--C-GGCGCGGCuGCCg -3'
miRNA:   3'- aCUG-UGCCUaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 131053 0.72 0.972725
Target:  5'- cGGCgGCGGGccUCUggacgcgGugGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUaaAGA-------CugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 130987 0.73 0.948471
Target:  5'- gUGAgCACGGuacccagcCUGACGCGgGCGGCCu -3'
miRNA:   3'- -ACU-GUGCCuaaa----GACUGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 130007 0.69 0.993683
Target:  5'- cUGuuuuCGGGUcUUCUGGCGgAGCAGCUu -3'
miRNA:   3'- -ACugu-GCCUA-AAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 127963 0.67 0.999176
Target:  5'- aGcCGCGGGagcagCUGGgGCAGCucgGCCa -3'
miRNA:   3'- aCuGUGCCUaaa--GACUgCGUCGu--UGG- -5'
14007 5' -49.7 NC_003521.1 + 127741 0.66 0.999454
Target:  5'- uUGGCACGGugcUCuUGAagagcCGCAGCGucuCCu -3'
miRNA:   3'- -ACUGUGCCuaaAG-ACU-----GCGUCGUu--GG- -5'
14007 5' -49.7 NC_003521.1 + 127194 0.71 0.984364
Target:  5'- cGGcCACGGGg--UUGACGCGGCugAGCUg -3'
miRNA:   3'- aCU-GUGCCUaaaGACUGCGUCG--UUGG- -5'
14007 5' -49.7 NC_003521.1 + 127062 0.67 0.998535
Target:  5'- aGACGCGG-----UGcCGCGGCAggGCCa -3'
miRNA:   3'- aCUGUGCCuaaagACuGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 124196 0.7 0.991663
Target:  5'- cGGCugGGGgugagcgggcccUUUCUGGC-CcGCGACCg -3'
miRNA:   3'- aCUGugCCU------------AAAGACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 123694 0.66 0.999691
Target:  5'- cGugGCGGuggaagagGAgGCGGCGGCUg -3'
miRNA:   3'- aCugUGCCuaaaga--CUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 121615 0.67 0.99848
Target:  5'- cUGGCGCucaccacCUGGCGCAGC-GCCa -3'
miRNA:   3'- -ACUGUGccuaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 120019 0.72 0.967094
Target:  5'- gGACuCGGAcaUC-GACaGCAGCAACCc -3'
miRNA:   3'- aCUGuGCCUaaAGaCUG-CGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.