miRNA display CGI


Results 1 - 20 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 192789 0.71 0.9781
Target:  5'- cGGCACGGGcuugcccuugUCgGAUcgcugGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCCUaa--------AGaCUG-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 148802 0.73 0.939382
Target:  5'- cGGCuGCGGAcgUUCaucguGCGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUa-AAGac---UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 108335 0.73 0.952656
Target:  5'- -uGCACGGGUcUCUGG-GCcGCAACCu -3'
miRNA:   3'- acUGUGCCUAaAGACUgCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 202733 0.73 0.952656
Target:  5'- uUGACGCGGcagg--GGCGCGGgGACCc -3'
miRNA:   3'- -ACUGUGCCuaaagaCUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 43478 0.72 0.960327
Target:  5'- -aGCGCGGcggccgugCUGGcCGCGGCGGCCa -3'
miRNA:   3'- acUGUGCCuaaa----GACU-GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 210029 0.72 0.967094
Target:  5'- gGACACGGAgcUCUGcACaCGGUAACg -3'
miRNA:   3'- aCUGUGCCUaaAGAC-UGcGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 193155 0.72 0.967094
Target:  5'- aUGGCGgGGGcgUCUGcugcugcuguuGCGCAGCuGCCg -3'
miRNA:   3'- -ACUGUgCCUaaAGAC-----------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 163193 0.72 0.970152
Target:  5'- gGACACGGug----GugGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCuaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 131053 0.72 0.972725
Target:  5'- cGGCgGCGGGccUCUggacgcgGugGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUaaAGA-------CugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 191056 0.73 0.939382
Target:  5'- cGACGCucagUUCUGuuccCGCGGCGACCg -3'
miRNA:   3'- aCUGUGccuaAAGACu---GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 139500 0.73 0.939382
Target:  5'- aGACACGuGUUUCUGguGCGCcacGUAGCCg -3'
miRNA:   3'- aCUGUGCcUAAAGAC--UGCGu--CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 73181 0.73 0.939382
Target:  5'- gGACGCGGAg--CUGGC-CGGCAucgacgugACCg -3'
miRNA:   3'- aCUGUGCCUaaaGACUGcGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 150842 0.77 0.797265
Target:  5'- cGACGUGGAUUUCUGGCuguuGCAGUuccAGCCg -3'
miRNA:   3'- aCUGUGCCUAAAGACUG----CGUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 77710 0.75 0.893288
Target:  5'- cGugGCGGcgUUgUUGGCGaCGGCGGCCu -3'
miRNA:   3'- aCugUGCCuaAA-GACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 88323 0.75 0.893288
Target:  5'- gGAUGCGGGUcUCgccgaaGCGCAGCGACUg -3'
miRNA:   3'- aCUGUGCCUAaAGac----UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 141378 0.75 0.893288
Target:  5'- gUGACGCGGugcccgaUGACGaCAGCAACg -3'
miRNA:   3'- -ACUGUGCCuaaag--ACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 196248 0.75 0.906266
Target:  5'- cUGGCGCGG-UUUCUGugGUuccGGguACCc -3'
miRNA:   3'- -ACUGUGCCuAAAGACugCG---UCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 31303 0.74 0.918282
Target:  5'- -uGCACGGggUUCUGcgcgagucccuuGCGCAGCAucgcgGCCu -3'
miRNA:   3'- acUGUGCCuaAAGAC------------UGCGUCGU-----UGG- -5'
14007 5' -49.7 NC_003521.1 + 210802 0.74 0.934474
Target:  5'- gGACACGGAacagUUCUGuucCGaCAGCGGuCCg -3'
miRNA:   3'- aCUGUGCCUa---AAGACu--GC-GUCGUU-GG- -5'
14007 5' -49.7 NC_003521.1 + 198089 0.73 0.939382
Target:  5'- uUGugGgGGGcgUCUGACGguGCuGCCc -3'
miRNA:   3'- -ACugUgCCUaaAGACUGCguCGuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.