miRNA display CGI


Results 41 - 60 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 196248 0.75 0.906266
Target:  5'- cUGGCGCGG-UUUCUGugGUuccGGguACCc -3'
miRNA:   3'- -ACUGUGCCuAAAGACugCG---UCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 141378 0.75 0.893288
Target:  5'- gUGACGCGGugcccgaUGACGaCAGCAACg -3'
miRNA:   3'- -ACUGUGCCuaaag--ACUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 88323 0.75 0.893288
Target:  5'- gGAUGCGGGUcUCgccgaaGCGCAGCGACUg -3'
miRNA:   3'- aCUGUGCCUAaAGac----UGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 77710 0.75 0.893288
Target:  5'- cGugGCGGcgUUgUUGGCGaCGGCGGCCu -3'
miRNA:   3'- aCugUGCCuaAA-GACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 150842 0.77 0.797265
Target:  5'- cGACGUGGAUUUCUGGCuguuGCAGUuccAGCCg -3'
miRNA:   3'- aCUGUGCCUAAAGACUG----CGUCG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 202733 0.73 0.952656
Target:  5'- uUGACGCGGcagg--GGCGCGGgGACCc -3'
miRNA:   3'- -ACUGUGCCuaaagaCUGCGUCgUUGG- -5'
14007 5' -49.7 NC_003521.1 + 43478 0.72 0.960327
Target:  5'- -aGCGCGGcggccgugCUGGcCGCGGCGGCCa -3'
miRNA:   3'- acUGUGCCuaaa----GACU-GCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 124196 0.7 0.991663
Target:  5'- cGGCugGGGgugagcgggcccUUUCUGGC-CcGCGACCg -3'
miRNA:   3'- aCUGugCCU------------AAAGACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 105946 0.7 0.991204
Target:  5'- cGGCGCGGAUga-UGaccgugugucggguGCGCAGCGugaagaaGCCg -3'
miRNA:   3'- aCUGUGCCUAaagAC--------------UGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 217108 0.7 0.989164
Target:  5'- cGACAUGGGUUg--GACGUAGauGCCc -3'
miRNA:   3'- aCUGUGCCUAAagaCUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 65444 0.7 0.989164
Target:  5'- gGuCAUGGGUccccgUCUGAUGCAGgaGACCc -3'
miRNA:   3'- aCuGUGCCUAa----AGACUGCGUCg-UUGG- -5'
14007 5' -49.7 NC_003521.1 + 63952 0.7 0.986116
Target:  5'- cUGAgCGUGGAgcugCUGGCGCGGC-GCCa -3'
miRNA:   3'- -ACU-GUGCCUaaa-GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 180066 0.71 0.984364
Target:  5'- cGGCGgGGA-UUCUccCGCGGCGACUg -3'
miRNA:   3'- aCUGUgCCUaAAGAcuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 164270 0.71 0.983995
Target:  5'- aGGCGCGGAccgccgcucCUGGacagccaccgcaGCAGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaa------GACUg-----------CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213955 0.71 0.980365
Target:  5'- aGACGCGGGUg---GGCGcCGGCucggGCCg -3'
miRNA:   3'- aCUGUGCCUAaagaCUGC-GUCGu---UGG- -5'
14007 5' -49.7 NC_003521.1 + 192789 0.71 0.9781
Target:  5'- cGGCACGGGcuugcccuugUCgGAUcgcugGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCCUaa--------AGaCUG-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 131053 0.72 0.972725
Target:  5'- cGGCgGCGGGccUCUggacgcgGugGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUaaAGA-------CugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 163193 0.72 0.970152
Target:  5'- gGACACGGug----GugGCGGCGGCa -3'
miRNA:   3'- aCUGUGCCuaaagaCugCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 193155 0.72 0.967094
Target:  5'- aUGGCGgGGGcgUCUGcugcugcuguuGCGCAGCuGCCg -3'
miRNA:   3'- -ACUGUgCCUaaAGAC-----------UGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 210029 0.72 0.967094
Target:  5'- gGACACGGAgcUCUGcACaCGGUAACg -3'
miRNA:   3'- aCUGUGCCUaaAGAC-UGcGUCGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.