miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 179237 0.69 0.996203
Target:  5'- cGcCGCGGGccUUCUGGCGCcugaacucgccggccAGCAGCg -3'
miRNA:   3'- aCuGUGCCUa-AAGACUGCG---------------UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 225566 0.68 0.99632
Target:  5'- aGACGgGGAcccgugucgucCUGGCGCucGGCGGCCu -3'
miRNA:   3'- aCUGUgCCUaaa--------GACUGCG--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 66509 0.68 0.996378
Target:  5'- gGGC-UGGAUUUCaaGGCGCAGCuggacaagaucgccGACCu -3'
miRNA:   3'- aCUGuGCCUAAAGa-CUGCGUCG--------------UUGG- -5'
14007 5' -49.7 NC_003521.1 + 169541 0.68 0.996547
Target:  5'- uUGAgAUGGAagagaaaCUGcCGCAGCAGCUc -3'
miRNA:   3'- -ACUgUGCCUaaa----GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 101482 0.68 0.997063
Target:  5'- gUGGCGCGuGAggugCUcGAgcaGCGGCGGCCa -3'
miRNA:   3'- -ACUGUGC-CUaaa-GA-CUg--CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 136941 0.68 0.997063
Target:  5'- gUGACugGGAguucCUGGCaC-GCGACCu -3'
miRNA:   3'- -ACUGugCCUaaa-GACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 49889 0.68 0.997063
Target:  5'- cGugGCGugcgUgUGGCGaCGGCAGCCa -3'
miRNA:   3'- aCugUGCcuaaAgACUGC-GUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 68236 0.69 0.99529
Target:  5'- aGGaGCGGuacgUUCaccUGGCGguGCGACCg -3'
miRNA:   3'- aCUgUGCCua--AAG---ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 227862 0.69 0.995218
Target:  5'- aGACugGGAUUcaugaggUCccGACGCGGgAugCg -3'
miRNA:   3'- aCUGugCCUAA-------AGa-CUGCGUCgUugG- -5'
14007 5' -49.7 NC_003521.1 + 131105 0.69 0.994534
Target:  5'- gGACgGCGGGg--C-GGCGCGGCuGCCg -3'
miRNA:   3'- aCUG-UGCCUaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 105946 0.7 0.991204
Target:  5'- cGGCGCGGAUga-UGaccgugugucggguGCGCAGCGugaagaaGCCg -3'
miRNA:   3'- aCUGUGCCUAaagAC--------------UGCGUCGU-------UGG- -5'
14007 5' -49.7 NC_003521.1 + 124196 0.7 0.991663
Target:  5'- cGGCugGGGgugagcgggcccUUUCUGGC-CcGCGACCg -3'
miRNA:   3'- aCUGugCCU------------AAAGACUGcGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44891 0.69 0.992729
Target:  5'- aGAUccaACGGAUcUCagacGGCGCGGCGGCg -3'
miRNA:   3'- aCUG---UGCCUAaAGa---CUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 113954 0.69 0.993772
Target:  5'- cGACACGGAggaggcagacaGACGgcaGGCGGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga------CUGCg--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 5535 0.69 0.994534
Target:  5'- gGugACGGcag-CcGGCGCGGCcGCCg -3'
miRNA:   3'- aCugUGCCuaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 64590 0.69 0.994534
Target:  5'- cGACAUGGugaagcggCUGGCGCGGgacgacacgcuuCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaa----GACUGCGUC------------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 212232 0.69 0.994534
Target:  5'- gGugGCGGu------GCGCAGCAGCCc -3'
miRNA:   3'- aCugUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 216126 0.68 0.997471
Target:  5'- cGGCGCGGAg----GcCGCGGCAgaggaagGCCa -3'
miRNA:   3'- aCUGUGCCUaaagaCuGCGUCGU-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.