miRNA display CGI


Results 101 - 120 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 145697 0.69 0.992729
Target:  5'- cGACGCGGAgcUUUCaagGccacgcucaaGCGCGcGCGGCCg -3'
miRNA:   3'- aCUGUGCCU--AAAGa--C----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 214685 0.69 0.993683
Target:  5'- aGACGCGGAagaccacGACGUugcguuGCAGCCa -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGu-----CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 113954 0.69 0.993772
Target:  5'- cGACACGGAggaggcagacaGACGgcaGGCGGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga------CUGCg--UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 5535 0.69 0.994534
Target:  5'- gGugACGGcag-CcGGCGCGGCcGCCg -3'
miRNA:   3'- aCugUGCCuaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 64590 0.69 0.994534
Target:  5'- cGACAUGGugaagcggCUGGCGCGGgacgacacgcuuCGGCCg -3'
miRNA:   3'- aCUGUGCCuaaa----GACUGCGUC------------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 212232 0.69 0.994534
Target:  5'- gGugGCGGu------GCGCAGCAGCCc -3'
miRNA:   3'- aCugUGCCuaaagacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 68532 0.69 0.995958
Target:  5'- cGACAcCGGAc----GGCgGCAGCGGCCg -3'
miRNA:   3'- aCUGU-GCCUaaagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 58705 0.69 0.995958
Target:  5'- cGAgACGGcc--UUGACGCAGCccACCg -3'
miRNA:   3'- aCUgUGCCuaaaGACUGCGUCGu-UGG- -5'
14007 5' -49.7 NC_003521.1 + 68236 0.69 0.99529
Target:  5'- aGGaGCGGuacgUUCaccUGGCGguGCGACCg -3'
miRNA:   3'- aCUgUGCCua--AAG---ACUGCguCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 227862 0.69 0.995218
Target:  5'- aGACugGGAUUcaugaggUCccGACGCGGgAugCg -3'
miRNA:   3'- aCUGugCCUAA-------AGa-CUGCGUCgUugG- -5'
14007 5' -49.7 NC_003521.1 + 131105 0.69 0.994534
Target:  5'- gGACgGCGGGg--C-GGCGCGGCuGCCg -3'
miRNA:   3'- aCUG-UGCCUaaaGaCUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 100074 0.74 0.923924
Target:  5'- cGGCACGGAgg-CgGGCGCcuCGACCg -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 91573 0.74 0.918282
Target:  5'- cGACAUGGccacgUCguaGGCGUAGUAGCCg -3'
miRNA:   3'- aCUGUGCCuaa--AGa--CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 18542 0.74 0.912395
Target:  5'- cUGGCACGGGgcUCUGggcaccaucacGCGCGcGCAGCUg -3'
miRNA:   3'- -ACUGUGCCUaaAGAC-----------UGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 26116 0.75 0.906266
Target:  5'- cGACGCGGucUUCUGGCuGCAacGCAACg -3'
miRNA:   3'- aCUGUGCCuaAAGACUG-CGU--CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 114774 0.75 0.893959
Target:  5'- gGACACGGAgaccaucuccaugCUGACGUucGGCAGCa -3'
miRNA:   3'- aCUGUGCCUaaa----------GACUGCG--UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 102967 0.79 0.720259
Target:  5'- gGGCGuCGGGgcUCUGGCGgGGCGGCCc -3'
miRNA:   3'- aCUGU-GCCUaaAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 117308 0.8 0.68984
Target:  5'- cGACGCGGAUUgcgGGCGgCAGCGGCg -3'
miRNA:   3'- aCUGUGCCUAAagaCUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 117357 0.81 0.638279
Target:  5'- gGACACGGAg--CUGACGCc-CAGCCu -3'
miRNA:   3'- aCUGUGCCUaaaGACUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 1870 0.66 0.999749
Target:  5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3'
miRNA:   3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.