miRNA display CGI


Results 1 - 20 of 242 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 189157 1.12 0.012136
Target:  5'- cUGACACGGAUUUCUGACGCAGCAACCc -3'
miRNA:   3'- -ACUGUGCCUAAAGACUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 230408 0.72 0.970152
Target:  5'- cGACACGcGGUUUUUGagauGCGgGGCGACg -3'
miRNA:   3'- aCUGUGC-CUAAAGAC----UGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 172350 0.72 0.970152
Target:  5'- gGGCgGCGGG-UUCUGACGCAGaaagucgaugcUGACCg -3'
miRNA:   3'- aCUG-UGCCUaAAGACUGCGUC-----------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 1870 0.66 0.999749
Target:  5'- cGGCGCcucuaauaccgcagCUGGCGCAGguACCg -3'
miRNA:   3'- aCUGUGccuaaa--------GACUGCGUCguUGG- -5'
14007 5' -49.7 NC_003521.1 + 114774 0.75 0.893959
Target:  5'- gGACACGGAgaccaucuccaugCUGACGUucGGCAGCa -3'
miRNA:   3'- aCUGUGCCUaaa----------GACUGCG--UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 26116 0.75 0.906266
Target:  5'- cGACGCGGucUUCUGGCuGCAacGCAACg -3'
miRNA:   3'- aCUGUGCCuaAAGACUG-CGU--CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 91573 0.74 0.918282
Target:  5'- cGACAUGGccacgUCguaGGCGUAGUAGCCg -3'
miRNA:   3'- aCUGUGCCuaa--AGa--CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 100074 0.74 0.923924
Target:  5'- cGGCACGGAgg-CgGGCGCcuCGACCg -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 16613 0.73 0.948039
Target:  5'- cGACuACGGGcgUcaguaccgcuggcUCUGuCGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUa-A-------------AGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 120019 0.72 0.967094
Target:  5'- gGACuCGGAcaUC-GACaGCAGCAACCc -3'
miRNA:   3'- aCUGuGCCUaaAGaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 109655 0.73 0.952656
Target:  5'- aGACGCGaGAUgaugCaGACGUAGCGGCg -3'
miRNA:   3'- aCUGUGC-CUAaa--GaCUGCGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 111348 0.74 0.934474
Target:  5'- --cCGCGGAcUUUCUGACGCAcGUgaaAACCa -3'
miRNA:   3'- acuGUGCCU-AAAGACUGCGU-CG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 117357 0.81 0.638279
Target:  5'- gGACACGGAg--CUGACGCc-CAGCCu -3'
miRNA:   3'- aCUGUGCCUaaaGACUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 224436 0.73 0.952656
Target:  5'- gGACGCGGAcacaUGAaggggaGCAGCAGCUu -3'
miRNA:   3'- aCUGUGCCUaaagACUg-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 117308 0.8 0.68984
Target:  5'- cGACGCGGAUUgcgGGCGgCAGCGGCg -3'
miRNA:   3'- aCUGUGCCUAAagaCUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 165262 0.74 0.923924
Target:  5'- gGACA-GGAgggcgCUGGCGUAGCcGCCg -3'
miRNA:   3'- aCUGUgCCUaaa--GACUGCGUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 115539 0.73 0.956607
Target:  5'- cGACGCGGcucgcCUGACGgAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 13856 0.72 0.970152
Target:  5'- cGGCGCGGGggucUCUGcGgGCGGCGccGCCa -3'
miRNA:   3'- aCUGUGCCUaa--AGAC-UgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 102967 0.79 0.720259
Target:  5'- gGGCGuCGGGgcUCUGGCGgGGCGGCCc -3'
miRNA:   3'- aCUGU-GCCUaaAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 18542 0.74 0.912395
Target:  5'- cUGGCACGGGgcUCUGggcaccaucacGCGCGcGCAGCUg -3'
miRNA:   3'- -ACUGUGCCUaaAGAC-----------UGCGU-CGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.