miRNA display CGI


Results 21 - 40 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 93902 0.71 0.975648
Target:  5'- gGGCAUGGGcguggCUGGuCGCGGCAAgCg -3'
miRNA:   3'- aCUGUGCCUaaa--GACU-GCGUCGUUgG- -5'
14007 5' -49.7 NC_003521.1 + 172350 0.72 0.970152
Target:  5'- gGGCgGCGGG-UUCUGACGCAGaaagucgaugcUGACCg -3'
miRNA:   3'- aCUG-UGCCUaAAGACUGCGUC-----------GUUGG- -5'
14007 5' -49.7 NC_003521.1 + 111348 0.74 0.934474
Target:  5'- --cCGCGGAcUUUCUGACGCAcGUgaaAACCa -3'
miRNA:   3'- acuGUGCCU-AAAGACUGCGU-CG---UUGG- -5'
14007 5' -49.7 NC_003521.1 + 102967 0.79 0.720259
Target:  5'- gGGCGuCGGGgcUCUGGCGgGGCGGCCc -3'
miRNA:   3'- aCUGU-GCCUaaAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 8742 0.7 0.986116
Target:  5'- gGACGCGGAaaaacgaGACGCGaCAGCCg -3'
miRNA:   3'- aCUGUGCCUaaaga--CUGCGUcGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 174817 0.71 0.98245
Target:  5'- -cACACGGggUUCUccaGCAGCGACUu -3'
miRNA:   3'- acUGUGCCuaAAGAcugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 230408 0.72 0.970152
Target:  5'- cGACACGcGGUUUUUGagauGCGgGGCGACg -3'
miRNA:   3'- aCUGUGC-CUAAAGAC----UGCgUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 117308 0.8 0.68984
Target:  5'- cGACGCGGAUUgcgGGCGgCAGCGGCg -3'
miRNA:   3'- aCUGUGCCUAAagaCUGC-GUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 170949 0.71 0.98245
Target:  5'- aUGGcCugGGcgUggcgCUG-CGCGGCGGCCu -3'
miRNA:   3'- -ACU-GugCCuaAa---GACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 117357 0.81 0.638279
Target:  5'- gGACACGGAg--CUGACGCc-CAGCCu -3'
miRNA:   3'- aCUGUGCCUaaaGACUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 13856 0.72 0.970152
Target:  5'- cGGCGCGGGggucUCUGcGgGCGGCGccGCCa -3'
miRNA:   3'- aCUGUGCCUaa--AGAC-UgCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 44374 0.71 0.9781
Target:  5'- ---aGCGGAggUUC--GCGCGGCAGCCg -3'
miRNA:   3'- acugUGCCUa-AAGacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 224436 0.73 0.952656
Target:  5'- gGACGCGGAcacaUGAaggggaGCAGCAGCUu -3'
miRNA:   3'- aCUGUGCCUaaagACUg-----CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 16613 0.73 0.948039
Target:  5'- cGACuACGGGcgUcaguaccgcuggcUCUGuCGCGGCGACCg -3'
miRNA:   3'- aCUG-UGCCUa-A-------------AGACuGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 91573 0.74 0.918282
Target:  5'- cGACAUGGccacgUCguaGGCGUAGUAGCCg -3'
miRNA:   3'- aCUGUGCCuaa--AGa--CUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 114774 0.75 0.893959
Target:  5'- gGACACGGAgaccaucuccaugCUGACGUucGGCAGCa -3'
miRNA:   3'- aCUGUGCCUaaa----------GACUGCG--UCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153594 0.7 0.990478
Target:  5'- gGACACGGucaacgUCagcgGGCGgAGCGACUu -3'
miRNA:   3'- aCUGUGCCuaa---AGa---CUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 69689 0.7 0.987092
Target:  5'- gGugACGGugguccuggugUCgGugGCGGCGGCCc -3'
miRNA:   3'- aCugUGCCuaa--------AGaCugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 119806 0.71 0.984364
Target:  5'- cGGCGCcgccgaGGAggUCUGGaGCAGCGGCUc -3'
miRNA:   3'- aCUGUG------CCUaaAGACUgCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 211343 0.71 0.98245
Target:  5'- gGGCGCGaGUggUUGGgguccCGCAGCAGCCg -3'
miRNA:   3'- aCUGUGCcUAaaGACU-----GCGUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.