miRNA display CGI


Results 81 - 100 of 242 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14007 5' -49.7 NC_003521.1 + 130007 0.69 0.993683
Target:  5'- cUGuuuuCGGGUcUUCUGGCGgAGCAGCUu -3'
miRNA:   3'- -ACugu-GCCUA-AAGACUGCgUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 151074 0.69 0.994534
Target:  5'- -cGCGCGGGUUUCUGGacCGC--CGACCc -3'
miRNA:   3'- acUGUGCCUAAAGACU--GCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 25807 0.69 0.995958
Target:  5'- cGAgACGGc--UCUGGCGguGCGuuacgagacGCCg -3'
miRNA:   3'- aCUgUGCCuaaAGACUGCguCGU---------UGG- -5'
14007 5' -49.7 NC_003521.1 + 4611 0.68 0.996547
Target:  5'- aGuCACGGuggUUUGACGUAGCAu-- -3'
miRNA:   3'- aCuGUGCCuaaAGACUGCGUCGUugg -5'
14007 5' -49.7 NC_003521.1 + 109327 0.68 0.996547
Target:  5'- gGGCAgGcGGUUga-GGCgGCAGCAGCCg -3'
miRNA:   3'- aCUGUgC-CUAAagaCUG-CGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 95211 0.68 0.997514
Target:  5'- cGGCAcCGGGUgc--GACuGCAGCAGCg -3'
miRNA:   3'- aCUGU-GCCUAaagaCUG-CGUCGUUGg -5'
14007 5' -49.7 NC_003521.1 + 153133 0.68 0.997905
Target:  5'- -aACACGGGccUCUcgGGCGCcuccacgcucAGCAACCa -3'
miRNA:   3'- acUGUGCCUaaAGA--CUGCG----------UCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 99788 0.71 0.984364
Target:  5'- aGGCcCGGGgugucacCUGGCGCAGUAcgGCCu -3'
miRNA:   3'- aCUGuGCCUaaa----GACUGCGUCGU--UGG- -5'
14007 5' -49.7 NC_003521.1 + 174817 0.71 0.98245
Target:  5'- -cACACGGggUUCUccaGCAGCGACUu -3'
miRNA:   3'- acUGUGCCuaAAGAcugCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 44374 0.71 0.9781
Target:  5'- ---aGCGGAggUUC--GCGCGGCAGCCg -3'
miRNA:   3'- acugUGCCUa-AAGacUGCGUCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 115796 0.67 0.998535
Target:  5'- -cGCGCGGAUacccgCgGAUGC-GCAGCCu -3'
miRNA:   3'- acUGUGCCUAaa---GaCUGCGuCGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 213889 0.67 0.998784
Target:  5'- gGGCGCGGAg--CUc-CGCuuguGCAACCu -3'
miRNA:   3'- aCUGUGCCUaaaGAcuGCGu---CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 105440 0.67 0.998996
Target:  5'- cGGCACGG---UUUGGCGCccgcgGGCGauaACCg -3'
miRNA:   3'- aCUGUGCCuaaAGACUGCG-----UCGU---UGG- -5'
14007 5' -49.7 NC_003521.1 + 166804 0.67 0.998996
Target:  5'- gUGACGCGGcgguagagCUcGCGCAGUA-CCa -3'
miRNA:   3'- -ACUGUGCCuaaa----GAcUGCGUCGUuGG- -5'
14007 5' -49.7 NC_003521.1 + 94821 0.67 0.999176
Target:  5'- gUGGCGCGGAU---UGACaaaagccgGCAGCGggaagcgcGCCa -3'
miRNA:   3'- -ACUGUGCCUAaagACUG--------CGUCGU--------UGG- -5'
14007 5' -49.7 NC_003521.1 + 26116 0.75 0.906266
Target:  5'- cGACGCGGucUUCUGGCuGCAacGCAACg -3'
miRNA:   3'- aCUGUGCCuaAAGACUG-CGU--CGUUGg -5'
14007 5' -49.7 NC_003521.1 + 100074 0.74 0.923924
Target:  5'- cGGCACGGAgg-CgGGCGCcuCGACCg -3'
miRNA:   3'- aCUGUGCCUaaaGaCUGCGucGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 130987 0.73 0.948471
Target:  5'- gUGAgCACGGuacccagcCUGACGCGgGCGGCCu -3'
miRNA:   3'- -ACU-GUGCCuaaa----GACUGCGU-CGUUGG- -5'
14007 5' -49.7 NC_003521.1 + 115539 0.73 0.956607
Target:  5'- cGACGCGGcucgcCUGACGgAGC-GCCg -3'
miRNA:   3'- aCUGUGCCuaaa-GACUGCgUCGuUGG- -5'
14007 5' -49.7 NC_003521.1 + 111247 0.72 0.973001
Target:  5'- cGGCGCGGcg--C-GGCGgAGCAGCCa -3'
miRNA:   3'- aCUGUGCCuaaaGaCUGCgUCGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.