miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14008 3' -54.2 NC_003521.1 + 23554 0.66 0.982909
Target:  5'- -gGCCAGCGCCUGCuccUCGUc-CGUCa -3'
miRNA:   3'- uaCGGUUGUGGGCGcu-AGUAcaGCAG- -5'
14008 3' -54.2 NC_003521.1 + 198435 0.66 0.982909
Target:  5'- -cGCCAcuccuACGCCaCGCGAUUG-GcCGUCg -3'
miRNA:   3'- uaCGGU-----UGUGG-GCGCUAGUaCaGCAG- -5'
14008 3' -54.2 NC_003521.1 + 142992 0.66 0.982909
Target:  5'- cUGUC-GCACCgGCGGUCGcGcCGUCc -3'
miRNA:   3'- uACGGuUGUGGgCGCUAGUaCaGCAG- -5'
14008 3' -54.2 NC_003521.1 + 87821 0.66 0.980906
Target:  5'- -aGCgGACAUCCGCGA-CGUGUUu-- -3'
miRNA:   3'- uaCGgUUGUGGGCGCUaGUACAGcag -5'
14008 3' -54.2 NC_003521.1 + 182312 0.66 0.980906
Target:  5'- -gGCgAAaacaaGCCCGCGAUCuacGUgGUCa -3'
miRNA:   3'- uaCGgUUg----UGGGCGCUAGua-CAgCAG- -5'
14008 3' -54.2 NC_003521.1 + 186261 0.66 0.980906
Target:  5'- -gGCCGcACACCCGCG-UCAaGcgcaaCGUCa -3'
miRNA:   3'- uaCGGU-UGUGGGCGCuAGUaCa----GCAG- -5'
14008 3' -54.2 NC_003521.1 + 181194 0.66 0.980906
Target:  5'- --aCCAACGCCUGCGAgccgCG-GUCGcCg -3'
miRNA:   3'- uacGGUUGUGGGCGCUa---GUaCAGCaG- -5'
14008 3' -54.2 NC_003521.1 + 228124 0.66 0.980906
Target:  5'- -cGCUcGCguuACCCGCGGUCGUGguccaCGUa -3'
miRNA:   3'- uaCGGuUG---UGGGCGCUAGUACa----GCAg -5'
14008 3' -54.2 NC_003521.1 + 45347 0.66 0.980906
Target:  5'- -cGCCGACguggaacggcgACCCaUGGUCGUuacGUCGUCa -3'
miRNA:   3'- uaCGGUUG-----------UGGGcGCUAGUA---CAGCAG- -5'
14008 3' -54.2 NC_003521.1 + 137971 0.66 0.980906
Target:  5'- uAUGCCGACGuggugcgcugugUCCGCGcgCAgGUCGaUCu -3'
miRNA:   3'- -UACGGUUGU------------GGGCGCuaGUaCAGC-AG- -5'
14008 3' -54.2 NC_003521.1 + 36540 0.66 0.978732
Target:  5'- -cGUCGGCAUgC-CGGUCAUGUCGa- -3'
miRNA:   3'- uaCGGUUGUGgGcGCUAGUACAGCag -5'
14008 3' -54.2 NC_003521.1 + 206751 0.66 0.978732
Target:  5'- -cGCCGACugCCGCcgacuaucgccGAUUA--UCGUCg -3'
miRNA:   3'- uaCGGUUGugGGCG-----------CUAGUacAGCAG- -5'
14008 3' -54.2 NC_003521.1 + 209532 0.66 0.97638
Target:  5'- -cGCC-GCugCCGCGGUUAUG-CGcCc -3'
miRNA:   3'- uaCGGuUGugGGCGCUAGUACaGCaG- -5'
14008 3' -54.2 NC_003521.1 + 18194 0.66 0.973843
Target:  5'- cUGCCGGC-CCUuCGAUCAcaUGUCGg- -3'
miRNA:   3'- uACGGUUGuGGGcGCUAGU--ACAGCag -5'
14008 3' -54.2 NC_003521.1 + 114867 0.66 0.973843
Target:  5'- gGUGCUGACGCCCGCG-UCG-GcCGa- -3'
miRNA:   3'- -UACGGUUGUGGGCGCuAGUaCaGCag -5'
14008 3' -54.2 NC_003521.1 + 167807 0.66 0.971114
Target:  5'- -aGCCAGCACCaC-CGcgCAUGUCa-- -3'
miRNA:   3'- uaCGGUUGUGG-GcGCuaGUACAGcag -5'
14008 3' -54.2 NC_003521.1 + 209253 0.66 0.971114
Target:  5'- cGUGCCAGCGuguCCCGCGAccugggcuUCGccgaGUgGUCg -3'
miRNA:   3'- -UACGGUUGU---GGGCGCU--------AGUa---CAgCAG- -5'
14008 3' -54.2 NC_003521.1 + 205026 0.67 0.968186
Target:  5'- cGUGCCGcgACGCCCGaugGAUcCGUuUCGUCc -3'
miRNA:   3'- -UACGGU--UGUGGGCg--CUA-GUAcAGCAG- -5'
14008 3' -54.2 NC_003521.1 + 123955 0.67 0.968186
Target:  5'- -aGCC-GCGCCacugCGCGcgCAgGUCGUCg -3'
miRNA:   3'- uaCGGuUGUGG----GCGCuaGUaCAGCAG- -5'
14008 3' -54.2 NC_003521.1 + 11610 0.67 0.968186
Target:  5'- cGUGCCAAgACUCGCGA-CAgGagGUCc -3'
miRNA:   3'- -UACGGUUgUGGGCGCUaGUaCagCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.