miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14008 5' -53.1 NC_003521.1 + 68391 0.66 0.992918
Target:  5'- -gGugGACGCCGugagAUGCCGGCuGGgcagcauguacaaccUGUCc -3'
miRNA:   3'- cgUugCUGUGGU----UACGGUCG-CC---------------ACAG- -5'
14008 5' -53.1 NC_003521.1 + 161078 0.66 0.992522
Target:  5'- gGCc-CGGCGCUGAUGUCGGUacGaGUGUCg -3'
miRNA:   3'- -CGuuGCUGUGGUUACGGUCG--C-CACAG- -5'
14008 5' -53.1 NC_003521.1 + 86218 0.66 0.992522
Target:  5'- gGCGGCGGCAC----GCCGGCGGc--- -3'
miRNA:   3'- -CGUUGCUGUGguuaCGGUCGCCacag -5'
14008 5' -53.1 NC_003521.1 + 215286 0.66 0.992522
Target:  5'- uGCAGaGGCagGCCAccGCCAGCGGcggcagGUUg -3'
miRNA:   3'- -CGUUgCUG--UGGUuaCGGUCGCCa-----CAG- -5'
14008 5' -53.1 NC_003521.1 + 145876 0.66 0.992522
Target:  5'- -gGGCGGCGCCGAcgacgaggccGCCGGCGGcGg- -3'
miRNA:   3'- cgUUGCUGUGGUUa---------CGGUCGCCaCag -5'
14008 5' -53.1 NC_003521.1 + 170170 0.66 0.992522
Target:  5'- aGCAGCugcaGCACCAGccgcaGCguGCGuGUGUCc -3'
miRNA:   3'- -CGUUGc---UGUGGUUa----CGguCGC-CACAG- -5'
14008 5' -53.1 NC_003521.1 + 76223 0.66 0.992522
Target:  5'- aGUGGCGGCgGCCGGUGgCguGGCGGUuacuGUCu -3'
miRNA:   3'- -CGUUGCUG-UGGUUACgG--UCGCCA----CAG- -5'
14008 5' -53.1 NC_003521.1 + 113797 0.66 0.992522
Target:  5'- cGCGACgGGCACCG----CGGCGGcGUCg -3'
miRNA:   3'- -CGUUG-CUGUGGUuacgGUCGCCaCAG- -5'
14008 5' -53.1 NC_003521.1 + 191707 0.66 0.992522
Target:  5'- aGCAGCGGCGCCGcgGUCAccacGCGcacuuuGUGg- -3'
miRNA:   3'- -CGUUGCUGUGGUuaCGGU----CGC------CACag -5'
14008 5' -53.1 NC_003521.1 + 114955 0.66 0.992522
Target:  5'- cGCAGCGGCGgC--UGCU-GCGGcGUCa -3'
miRNA:   3'- -CGUUGCUGUgGuuACGGuCGCCaCAG- -5'
14008 5' -53.1 NC_003521.1 + 219771 0.66 0.992522
Target:  5'- cGCcuACGuCGCCuuUGCgaCAGCGGUGg- -3'
miRNA:   3'- -CGu-UGCuGUGGuuACG--GUCGCCACag -5'
14008 5' -53.1 NC_003521.1 + 167311 0.66 0.991453
Target:  5'- aCGGCGuCGCCGAccUGCuucucgaagCAGCGGUGg- -3'
miRNA:   3'- cGUUGCuGUGGUU--ACG---------GUCGCCACag -5'
14008 5' -53.1 NC_003521.1 + 186764 0.66 0.991453
Target:  5'- uCGGCGGCAUCGGcggaGgCGGCGGUGg- -3'
miRNA:   3'- cGUUGCUGUGGUUa---CgGUCGCCACag -5'
14008 5' -53.1 NC_003521.1 + 5961 0.66 0.991453
Target:  5'- cGCAucucauccgaacACGACGCCGAUGCCAcGCuaucgccGUCc -3'
miRNA:   3'- -CGU------------UGCUGUGGUUACGGU-CGcca----CAG- -5'
14008 5' -53.1 NC_003521.1 + 114115 0.66 0.99111
Target:  5'- gGUGACGGCGCCcaaGAucauggucgaguacUGCCuGGCGGUGcCc -3'
miRNA:   3'- -CGUUGCUGUGG---UU--------------ACGG-UCGCCACaG- -5'
14008 5' -53.1 NC_003521.1 + 36967 0.66 0.990268
Target:  5'- cGCAGCGGaGCgGGUGCuCGGCGGcGa- -3'
miRNA:   3'- -CGUUGCUgUGgUUACG-GUCGCCaCag -5'
14008 5' -53.1 NC_003521.1 + 236472 0.66 0.990268
Target:  5'- cGCGAUGAgcgaACCGccGgCGGCGGUGg- -3'
miRNA:   3'- -CGUUGCUg---UGGUuaCgGUCGCCACag -5'
14008 5' -53.1 NC_003521.1 + 24220 0.66 0.990268
Target:  5'- aCAGCaGCACCAGcggguugGgCAGCGGgcgGUCg -3'
miRNA:   3'- cGUUGcUGUGGUUa------CgGUCGCCa--CAG- -5'
14008 5' -53.1 NC_003521.1 + 79748 0.66 0.990268
Target:  5'- cGUAcCGACAUCAGcGCCGGgcCGGUGa- -3'
miRNA:   3'- -CGUuGCUGUGGUUaCGGUC--GCCACag -5'
14008 5' -53.1 NC_003521.1 + 131048 0.66 0.990268
Target:  5'- gGCGGCGGCGgCGG-GCCucuggacGCGGUGg- -3'
miRNA:   3'- -CGUUGCUGUgGUUaCGGu------CGCCACag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.