miRNA display CGI


Results 41 - 60 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 150563 0.72 0.896728
Target:  5'- ---cGGGugGugGCGGCGGCgGCGGCg -3'
miRNA:   3'- cuuuCCCuaUugCGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 127200 0.72 0.9032
Target:  5'- --cGGGGuUGACGCGGCugAGCUGCAugaGCa -3'
miRNA:   3'- cuuUCCCuAUUGCGCUG--UCGGCGU---UG- -5'
14009 3' -51.5 NC_003521.1 + 98304 0.72 0.9032
Target:  5'- gGGAAGaGGAggaagugGugGCGGCGGCCaCGACg -3'
miRNA:   3'- -CUUUC-CCUa------UugCGCUGUCGGcGUUG- -5'
14009 3' -51.5 NC_003521.1 + 139568 0.72 0.905721
Target:  5'- uGAuGGGGAUGAugaaccaggucuugcCGUGGC-GCCGCGGCa -3'
miRNA:   3'- -CUuUCCCUAUU---------------GCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209558 0.72 0.909432
Target:  5'- ---cGGGGUGGCgGCGACGGUgGCGGg -3'
miRNA:   3'- cuuuCCCUAUUG-CGCUGUCGgCGUUg -5'
14009 3' -51.5 NC_003521.1 + 202147 0.72 0.915425
Target:  5'- --cGGGGAUGGCGcCGAgcCAGaCCGCAGg -3'
miRNA:   3'- cuuUCCCUAUUGC-GCU--GUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 1920 0.72 0.915425
Target:  5'- --cGGGGAUGGCGcCGAgcCAGaCCGCAGg -3'
miRNA:   3'- cuuUCCCUAUUGC-GCU--GUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 37536 0.72 0.915425
Target:  5'- --uGGGGGUGGgcaGCGGgGGUCGCGGCg -3'
miRNA:   3'- cuuUCCCUAUUg--CGCUgUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 84874 0.72 0.921175
Target:  5'- aGAAGGccgcccgguccGGGUGGCGCGAguaGGCCGuCAGCg -3'
miRNA:   3'- -CUUUC-----------CCUAUUGCGCUg--UCGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 56897 0.72 0.921175
Target:  5'- cGAGAGcuGGccguCGCGACAgcGCCGCAGCa -3'
miRNA:   3'- -CUUUC--CCuauuGCGCUGU--CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 78137 0.72 0.921175
Target:  5'- ---uGGGcgcguUAGCgGCGGCGGCCGCGAa -3'
miRNA:   3'- cuuuCCCu----AUUG-CGCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 14742 0.72 0.921175
Target:  5'- ---uGGGcGUGACGgGcCGGCCGCGGCc -3'
miRNA:   3'- cuuuCCC-UAUUGCgCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 93899 0.72 0.921175
Target:  5'- -cGAGGGcaugGGCGUGGCuGGUCGCGGCa -3'
miRNA:   3'- cuUUCCCua--UUGCGCUG-UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 186918 0.72 0.921175
Target:  5'- cAAGGGGGgcgccgGugGCGGgGGCgGCGGCg -3'
miRNA:   3'- cUUUCCCUa-----UugCGCUgUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 196435 0.72 0.923406
Target:  5'- uGAGGGuGGaAUAACgcaccucggccucggGCGugGGCCGCAGCc -3'
miRNA:   3'- -CUUUC-CC-UAUUG---------------CGCugUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 191235 0.71 0.926681
Target:  5'- cGAGucuuGGGAgGAgGCGGC-GCCGCGGCc -3'
miRNA:   3'- -CUUu---CCCUaUUgCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 144965 0.71 0.926681
Target:  5'- cGAAGGGcu-GCGCGACauccugAGCCaGCGGCa -3'
miRNA:   3'- cUUUCCCuauUGCGCUG------UCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 163917 0.71 0.926681
Target:  5'- ---cGGGu--GCgGCGGCAGCgGCAACg -3'
miRNA:   3'- cuuuCCCuauUG-CGCUGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 117206 0.71 0.926681
Target:  5'- -cGAGGcGGUGGagaugucgcaccCGCuGACGGCCGCGGCg -3'
miRNA:   3'- cuUUCC-CUAUU------------GCG-CUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 19445 0.71 0.931428
Target:  5'- aGAAAGGGGggaGGCGCGGCGggaccauGUCGCuGCg -3'
miRNA:   3'- -CUUUCCCUa--UUGCGCUGU-------CGGCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.