miRNA display CGI


Results 41 - 60 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 43472 0.73 0.875918
Target:  5'- ---cGGGccAGCGCGGCGGCCGUg-- -3'
miRNA:   3'- cuuuCCCuaUUGCGCUGUCGGCGuug -5'
14009 3' -51.5 NC_003521.1 + 43629 0.69 0.97684
Target:  5'- aGGAcGaGGAgGAgGCGGCGGCCGCcGCc -3'
miRNA:   3'- -CUUuC-CCUaUUgCGCUGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 44376 0.68 0.985203
Target:  5'- cGGAGGuuc-GCGCGGCAGCCGgcCGACc -3'
miRNA:   3'- cUUUCCcuauUGCGCUGUCGGC--GUUG- -5'
14009 3' -51.5 NC_003521.1 + 44948 0.68 0.986877
Target:  5'- gGAcGGGGAggaagGGCgGCGACA-CCGCGAUc -3'
miRNA:   3'- -CUuUCCCUa----UUG-CGCUGUcGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 45037 0.66 0.99623
Target:  5'- gGAAAGGGGU----CGAgAGCCGCGccGCu -3'
miRNA:   3'- -CUUUCCCUAuugcGCUgUCGGCGU--UG- -5'
14009 3' -51.5 NC_003521.1 + 46070 0.66 0.995599
Target:  5'- ---cGGGAUGAgguCGCGAC-GCC-CGGCg -3'
miRNA:   3'- cuuuCCCUAUU---GCGCUGuCGGcGUUG- -5'
14009 3' -51.5 NC_003521.1 + 48272 0.66 0.997692
Target:  5'- aGAGAGGGAgaaGACGgGAgAGaggaCGaCGACa -3'
miRNA:   3'- -CUUUCCCUa--UUGCgCUgUCg---GC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 48722 0.71 0.941737
Target:  5'- gGAGAGGuGGaGACGcCGGCGacGCUGCAGCa -3'
miRNA:   3'- -CUUUCC-CUaUUGC-GCUGU--CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 49092 0.68 0.981371
Target:  5'- cGggGGGcGAUAuccacaaaguGCGCGugGuGaCCGCGGCg -3'
miRNA:   3'- -CuuUCC-CUAU----------UGCGCugU-C-GGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 49552 0.67 0.992884
Target:  5'- ---uGGGcgucAUGAagagcaccaccugcCGCGugGGCCGCGGCg -3'
miRNA:   3'- cuuuCCC----UAUU--------------GCGCugUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 49668 0.72 0.896728
Target:  5'- gGAGAGGGGccgggcgAGCGCGGCGcugucGCCGuCAGCc -3'
miRNA:   3'- -CUUUCCCUa------UUGCGCUGU-----CGGC-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 50537 0.67 0.99408
Target:  5'- ---cGGGGUu-CGCGGCAGUauCGCAGg -3'
miRNA:   3'- cuuuCCCUAuuGCGCUGUCG--GCGUUg -5'
14009 3' -51.5 NC_003521.1 + 53407 0.72 0.896728
Target:  5'- -cAGGGGAUGGCGCGuCGGCagGuCGGCa -3'
miRNA:   3'- cuUUCCCUAUUGCGCuGUCGg-C-GUUG- -5'
14009 3' -51.5 NC_003521.1 + 55752 0.66 0.997692
Target:  5'- ---cGGGcggcaGCGACAGgCGCGGCc -3'
miRNA:   3'- cuuuCCCuauugCGCUGUCgGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 55976 0.66 0.995599
Target:  5'- ---uGGGGU----CGGCAGUCGCAGCg -3'
miRNA:   3'- cuuuCCCUAuugcGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 56591 0.69 0.979197
Target:  5'- -uGAGGaugugguuGAUGACGCGuAUGGCCGCcACg -3'
miRNA:   3'- cuUUCC--------CUAUUGCGC-UGUCGGCGuUG- -5'
14009 3' -51.5 NC_003521.1 + 56897 0.72 0.921175
Target:  5'- cGAGAGcuGGccguCGCGACAgcGCCGCAGCa -3'
miRNA:   3'- -CUUUC--CCuauuGCGCUGU--CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 57136 0.67 0.991502
Target:  5'- cGAAGcGAUAggucucgucggccacGCGCGGCAggucgucggcguGCCGCAGCa -3'
miRNA:   3'- cUUUCcCUAU---------------UGCGCUGU------------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 57697 0.73 0.853111
Target:  5'- --cGGGGA---UGCGACcGCCGCAACc -3'
miRNA:   3'- cuuUCCCUauuGCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 58393 0.75 0.778261
Target:  5'- cAGGGGGAUcugccgcggccgcguGAUGCGGCgguugacgaAGCCGCAGCg -3'
miRNA:   3'- cUUUCCCUA---------------UUGCGCUG---------UCGGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.