miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 210102 0.67 0.99408
Target:  5'- aGGucGGaGGUcACGCGACaugAGCCcGCGGCg -3'
miRNA:   3'- -CUuuCC-CUAuUGCGCUG---UCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209726 0.66 0.99623
Target:  5'- -cGAGGaGGUcgUGCG-CAGCgGCAGCc -3'
miRNA:   3'- cuUUCC-CUAuuGCGCuGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209558 0.72 0.909432
Target:  5'- ---cGGGGUGGCgGCGACGGUgGCGGg -3'
miRNA:   3'- cuuuCCCUAUUG-CGCUGUCGgCGUUg -5'
14009 3' -51.5 NC_003521.1 + 209087 0.7 0.954629
Target:  5'- cGAGGcGGcgGAgGCGGUGGCCGCGGCg -3'
miRNA:   3'- cUUUC-CCuaUUgCGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 207925 0.7 0.965436
Target:  5'- --cGGGGGcGGCGgGcACGGCgGCAGCa -3'
miRNA:   3'- cuuUCCCUaUUGCgC-UGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 207437 0.7 0.958457
Target:  5'- --cAGGGAga--GCGGCGGCUgGCGGCg -3'
miRNA:   3'- cuuUCCCUauugCGCUGUCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 205005 0.72 0.896068
Target:  5'- ---cGGGAgacccgcUAACGaCGGCGuGCCGCGACg -3'
miRNA:   3'- cuuuCCCU-------AUUGC-GCUGU-CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 202147 0.72 0.915425
Target:  5'- --cGGGGAUGGCGcCGAgcCAGaCCGCAGg -3'
miRNA:   3'- cuuUCCCUAUUGC-GCU--GUC-GGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 199479 0.75 0.802188
Target:  5'- cGAcGGuGGAUGACGCGAUAGCgaucgGCGGCg -3'
miRNA:   3'- -CUuUC-CCUAUUGCGCUGUCGg----CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 198531 0.67 0.99408
Target:  5'- cAGGGGGAUGcguaccgucUGCGAgGGCCGCuuCu -3'
miRNA:   3'- cUUUCCCUAUu--------GCGCUgUCGGCGuuG- -5'
14009 3' -51.5 NC_003521.1 + 197310 0.71 0.941737
Target:  5'- gGAGAGGGGgcggcaGGCGCuGACGgauguuggccGCCGCGGCc -3'
miRNA:   3'- -CUUUCCCUa-----UUGCG-CUGU----------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 197256 0.68 0.986877
Target:  5'- aGGAGcGGugcuUGACGCGGC-GCCgGCGGCg -3'
miRNA:   3'- cUUUC-CCu---AUUGCGCUGuCGG-CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 196696 0.68 0.983178
Target:  5'- cGGAGGaGGAgca-GCGACGGCCgacuucaccggcgGCGACg -3'
miRNA:   3'- -CUUUC-CCUauugCGCUGUCGG-------------CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 196435 0.72 0.923406
Target:  5'- uGAGGGuGGaAUAACgcaccucggccucggGCGugGGCCGCAGCc -3'
miRNA:   3'- -CUUUC-CC-UAUUG---------------CGCugUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 196073 0.73 0.860926
Target:  5'- cGAGGuGGAcUGGCGCGAgAGCUGCAGa -3'
miRNA:   3'- cUUUC-CCU-AUUGCGCUgUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 192632 0.74 0.811117
Target:  5'- --cGGGGAucucgUAACGCGACGGCgGgAACu -3'
miRNA:   3'- cuuUCCCU-----AUUGCGCUGUCGgCgUUG- -5'
14009 3' -51.5 NC_003521.1 + 192446 0.69 0.974292
Target:  5'- gGAGAGGGGcAugGCGGCGG-CGCc-- -3'
miRNA:   3'- -CUUUCCCUaUugCGCUGUCgGCGuug -5'
14009 3' -51.5 NC_003521.1 + 191263 0.76 0.7358
Target:  5'- --cGGGGAa---GCGGCAGCCGCAGa -3'
miRNA:   3'- cuuUCCCUauugCGCUGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 191235 0.71 0.926681
Target:  5'- cGAGucuuGGGAgGAgGCGGC-GCCGCGGCc -3'
miRNA:   3'- -CUUu---CCCUaUUgCGCUGuCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 190239 0.66 0.996784
Target:  5'- ---uGGGGUcuUGCGACAG-CGCGAa -3'
miRNA:   3'- cuuuCCCUAuuGCGCUGUCgGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.