miRNA display CGI


Results 21 - 40 of 253 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14009 3' -51.5 NC_003521.1 + 113790 0.66 0.996784
Target:  5'- ----cGGccAGCGCGACGGgcaCCGCGGCg -3'
miRNA:   3'- cuuucCCuaUUGCGCUGUC---GGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 123702 0.66 0.996784
Target:  5'- uGGAAGaGGAg---GCGGCGGCUgaGCGGCg -3'
miRNA:   3'- -CUUUC-CCUauugCGCUGUCGG--CGUUG- -5'
14009 3' -51.5 NC_003521.1 + 7996 0.66 0.996784
Target:  5'- -cGGGGGAgguacCGgGGCAgcGCCGUAGCu -3'
miRNA:   3'- cuUUCCCUauu--GCgCUGU--CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 116996 0.66 0.996784
Target:  5'- gGGAAGaGGAggagGACGaaGACGaCCGCAACg -3'
miRNA:   3'- -CUUUC-CCUa---UUGCg-CUGUcGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 4764 0.66 0.996784
Target:  5'- gGAAAcGGGAUcaGACGCGGguacaucauCAGCUGCcuGACc -3'
miRNA:   3'- -CUUU-CCCUA--UUGCGCU---------GUCGGCG--UUG- -5'
14009 3' -51.5 NC_003521.1 + 235270 0.66 0.996784
Target:  5'- cGGAcGGAacaacgAugGCGGCGGCCGCGc- -3'
miRNA:   3'- cUUUcCCUa-----UugCGCUGUCGGCGUug -5'
14009 3' -51.5 NC_003521.1 + 167666 0.66 0.996784
Target:  5'- gGAGAGGaGUGACGUGcucGCGGuuGCggUg -3'
miRNA:   3'- -CUUUCCcUAUUGCGC---UGUCggCGuuG- -5'
14009 3' -51.5 NC_003521.1 + 6374 0.66 0.996784
Target:  5'- cGGucGGGGU--CGCGGaggggcGCCGCAGCu -3'
miRNA:   3'- -CUuuCCCUAuuGCGCUgu----CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 221896 0.66 0.99646
Target:  5'- uGGGGcGGAUugccggcGCGCGGCGccacccuucggggcuGCCGCGGCg -3'
miRNA:   3'- cUUUC-CCUAu------UGCGCUGU---------------CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 75794 0.66 0.99623
Target:  5'- aGAAGGc----CGCGAUggaAGCCGCGGCg -3'
miRNA:   3'- cUUUCCcuauuGCGCUG---UCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 40705 0.66 0.99623
Target:  5'- cGAAGGuGAgugugugcUGGCGCG-CGGCUGUGACu -3'
miRNA:   3'- cUUUCC-CU--------AUUGCGCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 45037 0.66 0.99623
Target:  5'- gGAAAGGGGU----CGAgAGCCGCGccGCu -3'
miRNA:   3'- -CUUUCCCUAuugcGCUgUCGGCGU--UG- -5'
14009 3' -51.5 NC_003521.1 + 76340 0.66 0.99623
Target:  5'- -nGAGGc--GACgGUGACGGCUGCGGCg -3'
miRNA:   3'- cuUUCCcuaUUG-CGCUGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 209726 0.66 0.99623
Target:  5'- -cGAGGaGGUcgUGCG-CAGCgGCAGCc -3'
miRNA:   3'- cuUUCC-CUAuuGCGCuGUCGgCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 383 0.66 0.99623
Target:  5'- cGAAGGuGAgugugugcUGGCGCG-CGGCUGUGACu -3'
miRNA:   3'- cUUUCC-CU--------AUUGCGCuGUCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 68674 0.66 0.99623
Target:  5'- aGAgcGuGGAaGAgGCGGCcauguGCCGCGACg -3'
miRNA:   3'- -CUuuC-CCUaUUgCGCUGu----CGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 211104 0.66 0.99623
Target:  5'- uGGAGGGAUGuUGUuGguGCUGCGACu -3'
miRNA:   3'- cUUUCCCUAUuGCGcUguCGGCGUUG- -5'
14009 3' -51.5 NC_003521.1 + 102483 0.66 0.99623
Target:  5'- aGAGAGGcccGAgacgccguCGCG-CAGCCGCAGg -3'
miRNA:   3'- -CUUUCC---CUauu-----GCGCuGUCGGCGUUg -5'
14009 3' -51.5 NC_003521.1 + 95130 0.66 0.99623
Target:  5'- -uAAGaGGAUAGgGUaaGGCGGCCGCGccgACg -3'
miRNA:   3'- cuUUC-CCUAUUgCG--CUGUCGGCGU---UG- -5'
14009 3' -51.5 NC_003521.1 + 102747 0.66 0.99617
Target:  5'- uGGGAGGGccAGCgccucagcuguccGCGGCGGUCGCGGg -3'
miRNA:   3'- -CUUUCCCuaUUG-------------CGCUGUCGGCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.