Results 21 - 40 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14009 | 5' | -60.7 | NC_003521.1 | + | 25534 | 0.66 | 0.831373 |
Target: 5'- gCCGCCGCugGCGGUGGccuGCCUCugcaUCUCGc -3' miRNA: 3'- -GGCGGUG--CGCUACC---UGGGGug--AGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 124222 | 0.66 | 0.831373 |
Target: 5'- -gGCC-CGCGAccGGGCCCgAUUCCgAa -3' miRNA: 3'- ggCGGuGCGCUa-CCUGGGgUGAGGgU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 109766 | 0.66 | 0.831373 |
Target: 5'- gCCGCCAcCGCGuccgaGGcccGCCgCCGCcgCCCAg -3' miRNA: 3'- -GGCGGU-GCGCua---CC---UGG-GGUGa-GGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 57021 | 0.66 | 0.831373 |
Target: 5'- gCCGCCACGCgGAUGaACa-CGCcgCCCAg -3' miRNA: 3'- -GGCGGUGCG-CUACcUGggGUGa-GGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 4686 | 0.66 | 0.831373 |
Target: 5'- aCGUCGCGCGGUcccCCCCG-UCCCGu -3' miRNA: 3'- gGCGGUGCGCUAccuGGGGUgAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 234341 | 0.66 | 0.831373 |
Target: 5'- aCCGCCucCGCuGccGGACCUgcCUCCCGu -3' miRNA: 3'- -GGCGGu-GCG-CuaCCUGGGguGAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 22750 | 0.66 | 0.826676 |
Target: 5'- gCCGCCGCcucgcugugcuucgaGaCGGUGGACCUCAuCUaCCUg -3' miRNA: 3'- -GGCGGUG---------------C-GCUACCUGGGGU-GA-GGGu -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 132296 | 0.66 | 0.823514 |
Target: 5'- gCCGCCACGUGGaGG-CCaacaaaauCUCCCGc -3' miRNA: 3'- -GGCGGUGCGCUaCCuGGggu-----GAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 117146 | 0.66 | 0.823514 |
Target: 5'- aCCGCCACGCcgcaGcGCgCCgGCUCCCu -3' miRNA: 3'- -GGCGGUGCGcua-CcUG-GGgUGAGGGu -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 134615 | 0.66 | 0.82272 |
Target: 5'- gCGCCGCGCacucggaGAUGGccACCUCggaGCUCUCGg -3' miRNA: 3'- gGCGGUGCG-------CUACC--UGGGG---UGAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 60689 | 0.66 | 0.821924 |
Target: 5'- gCgGCCGCGCGggGGACCCgggggcggcgcggguCGCaccacgccgcugcccUCCCu -3' miRNA: 3'- -GgCGGUGCGCuaCCUGGG---------------GUG---------------AGGGu -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 14447 | 0.66 | 0.815504 |
Target: 5'- aCgGCCcUGCGgcGGcgucaGCCgCCGCUCCCGc -3' miRNA: 3'- -GgCGGuGCGCuaCC-----UGG-GGUGAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 119241 | 0.66 | 0.815504 |
Target: 5'- aCGCCGCGCuugaacaggugGAUGGugCCCAguaUCUg- -3' miRNA: 3'- gGCGGUGCG-----------CUACCugGGGUg--AGGgu -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 190284 | 0.66 | 0.815504 |
Target: 5'- uCCGCC-UGCGAUacugccgcGaACCCCGCggCCCAu -3' miRNA: 3'- -GGCGGuGCGCUA--------CcUGGGGUGa-GGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 222559 | 0.66 | 0.815504 |
Target: 5'- cCCGUCGCGgGcaGGuCCCCACcaccgcucgUCCCGa -3' miRNA: 3'- -GGCGGUGCgCuaCCuGGGGUG---------AGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 72983 | 0.66 | 0.815504 |
Target: 5'- gCGgC-CGCGggGGGCCuggCCGCUCCUg -3' miRNA: 3'- gGCgGuGCGCuaCCUGG---GGUGAGGGu -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 219046 | 0.66 | 0.815504 |
Target: 5'- aCCGCCACG-GAcaGGcACgCCACggcgCCCAg -3' miRNA: 3'- -GGCGGUGCgCUa-CC-UGgGGUGa---GGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 76071 | 0.67 | 0.80735 |
Target: 5'- uUCGCCcggcgacCGCGAUGc-CCCC-CUCCCGc -3' miRNA: 3'- -GGCGGu------GCGCUACcuGGGGuGAGGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 29345 | 0.67 | 0.80735 |
Target: 5'- gCUGCCACGCGcacUGGACggagugcgaaCCCGCggCCGc -3' miRNA: 3'- -GGCGGUGCGCu--ACCUG----------GGGUGagGGU- -5' |
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14009 | 5' | -60.7 | NC_003521.1 | + | 236500 | 0.67 | 0.80735 |
Target: 5'- gCGCCAgGC-AUGGAcggucgagcCCCCGCcgUCCCu -3' miRNA: 3'- gGCGGUgCGcUACCU---------GGGGUG--AGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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