miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1401 3' -55.9 NC_001335.1 + 50632 0.68 0.535566
Target:  5'- -gGCACcuaacGCCGACUggggcgaagacaUGACGGCCACguCGGg -3'
miRNA:   3'- ugCGUG-----UGGCUGA------------ACUGUCGGUG--GCU- -5'
1401 3' -55.9 NC_001335.1 + 4077 0.68 0.535565
Target:  5'- cAUGCcgACCGGCgaGGCAGCCGgCGGc -3'
miRNA:   3'- -UGCGugUGGCUGaaCUGUCGGUgGCU- -5'
1401 3' -55.9 NC_001335.1 + 38792 0.68 0.535565
Target:  5'- gAUGCGCuccCCGAUgacuugGACGGCCGgCGGg -3'
miRNA:   3'- -UGCGUGu--GGCUGaa----CUGUCGGUgGCU- -5'
1401 3' -55.9 NC_001335.1 + 48158 0.68 0.524935
Target:  5'- gGCGUccGCGCCG-CUUGACAuaCACCuGAa -3'
miRNA:   3'- -UGCG--UGUGGCuGAACUGUcgGUGG-CU- -5'
1401 3' -55.9 NC_001335.1 + 5628 0.68 0.523877
Target:  5'- cCGCAaugauguCACCGAg--GuCAGCCGCCGAc -3'
miRNA:   3'- uGCGU-------GUGGCUgaaCuGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 52010 0.69 0.503924
Target:  5'- uACGCAUACCGAUgcgauagUGAgCAGCCuaugCGAa -3'
miRNA:   3'- -UGCGUGUGGCUGa------ACU-GUCGGug--GCU- -5'
1401 3' -55.9 NC_001335.1 + 16960 0.69 0.493555
Target:  5'- -aGCACGCCGGCacGAU-GCuCACCGGa -3'
miRNA:   3'- ugCGUGUGGCUGaaCUGuCG-GUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 438 0.69 0.480225
Target:  5'- cCGCGCACUGGCgcggccuugagauccGGCGGUUGCCGAu -3'
miRNA:   3'- uGCGUGUGGCUGaa-------------CUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 48271 0.7 0.443292
Target:  5'- gGCGCucGCGCCGuacCUUGucGCGGCCgGCCGGc -3'
miRNA:   3'- -UGCG--UGUGGCu--GAAC--UGUCGG-UGGCU- -5'
1401 3' -55.9 NC_001335.1 + 46285 0.7 0.424006
Target:  5'- cGCGCugACCGug--GGCauAGCCGCUGAg -3'
miRNA:   3'- -UGCGugUGGCugaaCUG--UCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 13613 0.7 0.405231
Target:  5'- cCGCAuCACCGACgagGGCuacuucccGGCCACCa- -3'
miRNA:   3'- uGCGU-GUGGCUGaa-CUG--------UCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 14854 0.7 0.405231
Target:  5'- -gGCugAUCccaACUUGACAGCCACCc- -3'
miRNA:   3'- ugCGugUGGc--UGAACUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 7396 0.71 0.378071
Target:  5'- aACGCccacauccccgGCACCGA---GACGGUCGCCGAg -3'
miRNA:   3'- -UGCG-----------UGUGGCUgaaCUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 6069 0.71 0.369294
Target:  5'- cGCGCugGCCGGCUacucgcaGGgAGCCAUCGu -3'
miRNA:   3'- -UGCGugUGGCUGAa------CUgUCGGUGGCu -5'
1401 3' -55.9 NC_001335.1 + 42979 0.71 0.352163
Target:  5'- -aGguCACC---UUGACAGCCACCGAu -3'
miRNA:   3'- ugCguGUGGcugAACUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 22755 0.72 0.311842
Target:  5'- cCGCACcaACCccgcaGACgagaaGACAGCCACCGAc -3'
miRNA:   3'- uGCGUG--UGG-----CUGaa---CUGUCGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 18263 0.73 0.285044
Target:  5'- aACGCGCuguccgucguuggccGCUGACUUGACAuCCACCa- -3'
miRNA:   3'- -UGCGUG---------------UGGCUGAACUGUcGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 51732 0.73 0.281469
Target:  5'- -aGgGCACCaauuugcgauuagGGCUUGACAGCCACCc- -3'
miRNA:   3'- ugCgUGUGG-------------CUGAACUGUCGGUGGcu -5'
1401 3' -55.9 NC_001335.1 + 12302 0.74 0.254145
Target:  5'- gACGC-CACCGaagccugauccagGCUUGACAuCCACCGGg -3'
miRNA:   3'- -UGCGuGUGGC-------------UGAACUGUcGGUGGCU- -5'
1401 3' -55.9 NC_001335.1 + 17452 0.74 0.241948
Target:  5'- -aGCGCGCCGAUga-GCGcGCCGCCGAu -3'
miRNA:   3'- ugCGUGUGGCUGaacUGU-CGGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.