miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1401 5' -49.9 NC_001335.1 + 16321 0.66 0.939971
Target:  5'- gCCAGc--GCCgGCUCCGAACGCa--- -3'
miRNA:   3'- aGGUCuacUGG-UGAGGUUUGCGauac -5'
1401 5' -49.9 NC_001335.1 + 2631 0.66 0.939971
Target:  5'- gCCAGGUGcCCGCUCCAcccagGAgGUgaacaGUGg -3'
miRNA:   3'- aGGUCUACuGGUGAGGU-----UUgCGa----UAC- -5'
1401 5' -49.9 NC_001335.1 + 9213 0.66 0.939971
Target:  5'- cUCC-GA-GACCGg-CCAGACGCUGUu -3'
miRNA:   3'- -AGGuCUaCUGGUgaGGUUUGCGAUAc -5'
1401 5' -49.9 NC_001335.1 + 43258 0.66 0.928769
Target:  5'- gCCGGGUGACgACUuCCAGcucggcguguacGCGCUc-- -3'
miRNA:   3'- aGGUCUACUGgUGA-GGUU------------UGCGAuac -5'
1401 5' -49.9 NC_001335.1 + 20616 0.66 0.922712
Target:  5'- cUCCAcc-GACCGCgCCGAGCGCg--- -3'
miRNA:   3'- -AGGUcuaCUGGUGaGGUUUGCGauac -5'
1401 5' -49.9 NC_001335.1 + 22606 0.67 0.909688
Target:  5'- gCCGGcgGUGACgACUUCGAGCGaCUGa- -3'
miRNA:   3'- aGGUC--UACUGgUGAGGUUUGC-GAUac -5'
1401 5' -49.9 NC_001335.1 + 8871 0.67 0.902725
Target:  5'- aCCGGGUGuCCAaggccaUCCGAGuCGCaUAUGa -3'
miRNA:   3'- aGGUCUACuGGUg-----AGGUUU-GCG-AUAC- -5'
1401 5' -49.9 NC_001335.1 + 49643 0.67 0.895465
Target:  5'- cCUGGAUGGCCGCgCUGGACgGCUAc- -3'
miRNA:   3'- aGGUCUACUGGUGaGGUUUG-CGAUac -5'
1401 5' -49.9 NC_001335.1 + 17967 0.67 0.887912
Target:  5'- aCCAGcucGACCAgaUCCAGGCGCa--- -3'
miRNA:   3'- aGGUCua-CUGGUg-AGGUUUGCGauac -5'
1401 5' -49.9 NC_001335.1 + 15930 0.68 0.854901
Target:  5'- cCCAGGccaaGGCCgACUUCAAGCGC-AUGa -3'
miRNA:   3'- aGGUCUa---CUGG-UGAGGUUUGCGaUAC- -5'
1401 5' -49.9 NC_001335.1 + 25103 0.69 0.816826
Target:  5'- uUCCGGGUGuACUcCUCCAGcgugaugGCGCUGg- -3'
miRNA:   3'- -AGGUCUAC-UGGuGAGGUU-------UGCGAUac -5'
1401 5' -49.9 NC_001335.1 + 41877 0.69 0.807961
Target:  5'- aUCCGGGUG-CCGCUgUAcgggGACGCUGg- -3'
miRNA:   3'- -AGGUCUACuGGUGAgGU----UUGCGAUac -5'
1401 5' -49.9 NC_001335.1 + 2583 0.69 0.787686
Target:  5'- cCCGGAggaagcGACCAC-CCGAACGCc--- -3'
miRNA:   3'- aGGUCUa-----CUGGUGaGGUUUGCGauac -5'
1401 5' -49.9 NC_001335.1 + 29241 0.73 0.597091
Target:  5'- aCCAGAUGACCGCU---GACGCa--- -3'
miRNA:   3'- aGGUCUACUGGUGAgguUUGCGauac -5'
1401 5' -49.9 NC_001335.1 + 34404 0.73 0.585616
Target:  5'- gCCAGcgGcCCGCUgCCGuuCGCUGUGa -3'
miRNA:   3'- aGGUCuaCuGGUGA-GGUuuGCGAUAC- -5'
1401 5' -49.9 NC_001335.1 + 40302 1.09 0.0031
Target:  5'- aUCCAGAUGACCACUCCAAACGCUAUGc -3'
miRNA:   3'- -AGGUCUACUGGUGAGGUUUGCGAUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.