miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14010 3' -59.6 NC_003521.1 + 132607 0.66 0.892639
Target:  5'- --cGUCGGCGUcCGCaacggcuuccagacuCGGCGGcGGCGc -3'
miRNA:   3'- guuCAGCUGCA-GCGc--------------GCCGCCaCCGC- -5'
14010 3' -59.6 NC_003521.1 + 128374 0.66 0.892014
Target:  5'- uCAGGUCcACGUUGCGCuccaGCGGguccuUGGUGu -3'
miRNA:   3'- -GUUCAGcUGCAGCGCGc---CGCC-----ACCGC- -5'
14010 3' -59.6 NC_003521.1 + 148449 0.66 0.892013
Target:  5'- gGAG-CGACGgcagCGgGCGaGCGGacgGGCa -3'
miRNA:   3'- gUUCaGCUGCa---GCgCGC-CGCCa--CCGc -5'
14010 3' -59.6 NC_003521.1 + 105476 0.66 0.892013
Target:  5'- gGAGaCGGCG-CGCGCGGgaGGgaGGCa -3'
miRNA:   3'- gUUCaGCUGCaGCGCGCCg-CCa-CCGc -5'
14010 3' -59.6 NC_003521.1 + 186917 0.66 0.892013
Target:  5'- cCAAGgggGGCGcCG-GUGGCGGgGGCGg -3'
miRNA:   3'- -GUUCag-CUGCaGCgCGCCGCCaCCGC- -5'
14010 3' -59.6 NC_003521.1 + 123640 0.66 0.892013
Target:  5'- uCGGG-CGGCGgcaGCGaCGGCGGguuaGGCu -3'
miRNA:   3'- -GUUCaGCUGCag-CGC-GCCGCCa---CCGc -5'
14010 3' -59.6 NC_003521.1 + 98214 0.66 0.892013
Target:  5'- --uGUCGGCGg-GCaGCGGCGuGggaGGCGg -3'
miRNA:   3'- guuCAGCUGCagCG-CGCCGC-Ca--CCGC- -5'
14010 3' -59.6 NC_003521.1 + 74570 0.66 0.885649
Target:  5'- uGAGggCGGCGaCGgaGCGGCGGcgcGGCGu -3'
miRNA:   3'- gUUCa-GCUGCaGCg-CGCCGCCa--CCGC- -5'
14010 3' -59.6 NC_003521.1 + 154282 0.66 0.885649
Target:  5'- -cAGUCG-CGUggaGCGgGGCGGcacGGCGu -3'
miRNA:   3'- guUCAGCuGCAg--CGCgCCGCCa--CCGC- -5'
14010 3' -59.6 NC_003521.1 + 91918 0.66 0.885649
Target:  5'- cCAGGaCGGCGgcggCGaUGCGGUGGacccGGCGg -3'
miRNA:   3'- -GUUCaGCUGCa---GC-GCGCCGCCa---CCGC- -5'
14010 3' -59.6 NC_003521.1 + 190534 0.66 0.885649
Target:  5'- gCGAGgugCGGCGgcaGCaGCGGCGGacccGGCu -3'
miRNA:   3'- -GUUCa--GCUGCag-CG-CGCCGCCa---CCGc -5'
14010 3' -59.6 NC_003521.1 + 74137 0.66 0.885649
Target:  5'- gCAGGaCGACGUgGCGCGccaCGG-GGCc -3'
miRNA:   3'- -GUUCaGCUGCAgCGCGCc--GCCaCCGc -5'
14010 3' -59.6 NC_003521.1 + 74887 0.66 0.885649
Target:  5'- ----aCGGCGcugcUGCGCGaGaCGGUGGCGg -3'
miRNA:   3'- guucaGCUGCa---GCGCGC-C-GCCACCGC- -5'
14010 3' -59.6 NC_003521.1 + 127259 0.66 0.881736
Target:  5'- --cGUCGGCGUCcauggcgcccagGCGCGGCacguccgacacgccGUGGUGg -3'
miRNA:   3'- guuCAGCUGCAG------------CGCGCCGc-------------CACCGC- -5'
14010 3' -59.6 NC_003521.1 + 118405 0.66 0.879088
Target:  5'- --cGUUGugGUCGuCGCguccgggucgauGGUGGUGGUc -3'
miRNA:   3'- guuCAGCugCAGC-GCG------------CCGCCACCGc -5'
14010 3' -59.6 NC_003521.1 + 76340 0.66 0.879088
Target:  5'- gGAGgCGACGgugacgGCuGCGGCGGcGGCa -3'
miRNA:   3'- gUUCaGCUGCag----CG-CGCCGCCaCCGc -5'
14010 3' -59.6 NC_003521.1 + 76687 0.66 0.879088
Target:  5'- gAAGcCGACGacgggucCGUGUaGCGGUGGCa -3'
miRNA:   3'- gUUCaGCUGCa------GCGCGcCGCCACCGc -5'
14010 3' -59.6 NC_003521.1 + 169455 0.66 0.879088
Target:  5'- gCGGGUCGcCGUgGaCGaacagguaGGUGGUGGUGa -3'
miRNA:   3'- -GUUCAGCuGCAgC-GCg-------CCGCCACCGC- -5'
14010 3' -59.6 NC_003521.1 + 136637 0.66 0.872334
Target:  5'- ---aUCGGCcacgggCGCGgGGCGGcGGCGa -3'
miRNA:   3'- guucAGCUGca----GCGCgCCGCCaCCGC- -5'
14010 3' -59.6 NC_003521.1 + 178074 0.66 0.872334
Target:  5'- aAGGUCGAgGUCGCggucGCGGUauGUGGUc -3'
miRNA:   3'- gUUCAGCUgCAGCG----CGCCGc-CACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.