miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14010 5' -58.4 NC_003521.1 + 239787 0.66 0.890167
Target:  5'- ---cCCGACGCCGGCcaucuGGcUGcGCGGCGUg -3'
miRNA:   3'- gagaGGUUGCGGCCG-----CC-AU-CGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 64753 0.66 0.890167
Target:  5'- ---gCCAagACGCCGGCcGgcGCGGCAc -3'
miRNA:   3'- gagaGGU--UGCGGCCGcCauCGUCGUa -5'
14010 5' -58.4 NC_003521.1 + 48916 0.66 0.890167
Target:  5'- uCUCUUCGGCGCCgacuaucagcGGCGGggagGGagaAGCGg -3'
miRNA:   3'- -GAGAGGUUGCGG----------CCGCCa---UCg--UCGUa -5'
14010 5' -58.4 NC_003521.1 + 31687 0.66 0.890167
Target:  5'- uUCUCCAGgugaaaGUgGgGCGGcGGCAGCAUg -3'
miRNA:   3'- gAGAGGUUg-----CGgC-CGCCaUCGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 39560 0.66 0.890167
Target:  5'- ---cCCGACGCCGGCcaucuGGcUGcGCGGCGUg -3'
miRNA:   3'- gagaGGUUGCGGCCG-----CC-AU-CGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 236484 0.66 0.890167
Target:  5'- ---aCCGcCGgCGGCGGUGGCgccaGGCAUg -3'
miRNA:   3'- gagaGGUuGCgGCCGCCAUCG----UCGUA- -5'
14010 5' -58.4 NC_003521.1 + 181025 0.66 0.890167
Target:  5'- --gUCCAGCGCCGuGuCGGUguccuugcggaaGGCGGUGUa -3'
miRNA:   3'- gagAGGUUGCGGC-C-GCCA------------UCGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 151764 0.66 0.890167
Target:  5'- aUCUCCAggcagcuguggcGCGCCuGCaGGUA-CAGCAUg -3'
miRNA:   3'- gAGAGGU------------UGCGGcCG-CCAUcGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 211687 0.66 0.883522
Target:  5'- gUCUgCAGCugguGCUGGauGUAGCAGCGc -3'
miRNA:   3'- gAGAgGUUG----CGGCCgcCAUCGUCGUa -5'
14010 5' -58.4 NC_003521.1 + 33670 0.66 0.883522
Target:  5'- --aUCCAGCGaCCGGCcGUGGCccGCAc -3'
miRNA:   3'- gagAGGUUGC-GGCCGcCAUCGu-CGUa -5'
14010 5' -58.4 NC_003521.1 + 54492 0.66 0.883522
Target:  5'- -aCUUgAugGCCGGCGGcc-CGGCGUg -3'
miRNA:   3'- gaGAGgUugCGGCCGCCaucGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 44058 0.66 0.883522
Target:  5'- ---cCCGcggucGCGCCGGcCGG-GGCAGCAg -3'
miRNA:   3'- gagaGGU-----UGCGGCC-GCCaUCGUCGUa -5'
14010 5' -58.4 NC_003521.1 + 116019 0.66 0.876669
Target:  5'- gUCUCCAG-GCC-GCGGUGGaagAGCAUc -3'
miRNA:   3'- gAGAGGUUgCGGcCGCCAUCg--UCGUA- -5'
14010 5' -58.4 NC_003521.1 + 46972 0.66 0.876669
Target:  5'- gCUCU-CGACGUCGcuGCGGUA-CAGCAUg -3'
miRNA:   3'- -GAGAgGUUGCGGC--CGCCAUcGUCGUA- -5'
14010 5' -58.4 NC_003521.1 + 36389 0.66 0.876669
Target:  5'- gCUUUCCGugcUGCUGGCGGcAGCgcggGGCGUg -3'
miRNA:   3'- -GAGAGGUu--GCGGCCGCCaUCG----UCGUA- -5'
14010 5' -58.4 NC_003521.1 + 187204 0.66 0.876669
Target:  5'- aUCggggaCAuuCGUCGGCGG-AGCAGCAg -3'
miRNA:   3'- gAGag---GUu-GCGGCCGCCaUCGUCGUa -5'
14010 5' -58.4 NC_003521.1 + 108288 0.66 0.876669
Target:  5'- ---aCCGAgGgCGGUGGUGGCGGUg- -3'
miRNA:   3'- gagaGGUUgCgGCCGCCAUCGUCGua -5'
14010 5' -58.4 NC_003521.1 + 122510 0.66 0.876669
Target:  5'- ---gCCAACGCggCGGCGGgcaggccGGCGGCGg -3'
miRNA:   3'- gagaGGUUGCG--GCCGCCa------UCGUCGUa -5'
14010 5' -58.4 NC_003521.1 + 17350 0.66 0.876669
Target:  5'- -cCUCCcgggccguGACGCCGGCGc-GGCGGCc- -3'
miRNA:   3'- gaGAGG--------UUGCGGCCGCcaUCGUCGua -5'
14010 5' -58.4 NC_003521.1 + 200200 0.66 0.876669
Target:  5'- -cCUCCGACGaugCGGCGaGaAGCGGCu- -3'
miRNA:   3'- gaGAGGUUGCg--GCCGC-CaUCGUCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.