miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14011 3' -55 NC_003521.1 + 212863 0.65 0.97944
Target:  5'- gCAGCGGUauggUCgUCGUCGUGGAcgcGGGCg -3'
miRNA:   3'- -GUUGCCGg---AGaAGCGGCACCU---CUUGa -5'
14011 3' -55 NC_003521.1 + 75822 0.65 0.97944
Target:  5'- -cGCGGCCUCcUCGCUG-GGAu---- -3'
miRNA:   3'- guUGCCGGAGaAGCGGCaCCUcuuga -5'
14011 3' -55 NC_003521.1 + 140212 0.65 0.97944
Target:  5'- uGGCGGCCgagUCGCCGUGcAGcAUg -3'
miRNA:   3'- gUUGCCGGagaAGCGGCACcUCuUGa -5'
14011 3' -55 NC_003521.1 + 101023 0.65 0.97944
Target:  5'- aCGGCGGCUUCgccacCGCCGaGGGcGACg -3'
miRNA:   3'- -GUUGCCGGAGaa---GCGGCaCCUcUUGa -5'
14011 3' -55 NC_003521.1 + 149394 0.66 0.977181
Target:  5'- cCGugGGCUUCgUgGCCGUGGccgucacGGACg -3'
miRNA:   3'- -GUugCCGGAGaAgCGGCACCu------CUUGa -5'
14011 3' -55 NC_003521.1 + 166966 0.66 0.977181
Target:  5'- ---aGGCuCUCgUCGCUGUGGuuGACg -3'
miRNA:   3'- guugCCG-GAGaAGCGGCACCucUUGa -5'
14011 3' -55 NC_003521.1 + 102145 0.66 0.974745
Target:  5'- -cACGGCCUUgUCGCCG-GuGAG-GCUc -3'
miRNA:   3'- guUGCCGGAGaAGCGGCaC-CUCuUGA- -5'
14011 3' -55 NC_003521.1 + 110538 0.66 0.974745
Target:  5'- -cGCGGCCUCgcccagguaGCCG-GaGAGGGCg -3'
miRNA:   3'- guUGCCGGAGaag------CGGCaC-CUCUUGa -5'
14011 3' -55 NC_003521.1 + 184851 0.66 0.974745
Target:  5'- -uGCGGCCcCUgcacaUCGgCGUGGuGGGGCUg -3'
miRNA:   3'- guUGCCGGaGA-----AGCgGCACC-UCUUGA- -5'
14011 3' -55 NC_003521.1 + 80140 0.66 0.974745
Target:  5'- -uGCGGCCggugCUgcgcguccaGCCGcUGGAGGGCc -3'
miRNA:   3'- guUGCCGGa---GAag-------CGGC-ACCUCUUGa -5'
14011 3' -55 NC_003521.1 + 233434 0.66 0.974491
Target:  5'- cCGACGGCCUCgaCGCgGUcccuucuGGccaAGAACa -3'
miRNA:   3'- -GUUGCCGGAGaaGCGgCA-------CC---UCUUGa -5'
14011 3' -55 NC_003521.1 + 4874 0.66 0.972125
Target:  5'- -cGCGGCCUCgaucCGCUc-GGGGAACc -3'
miRNA:   3'- guUGCCGGAGaa--GCGGcaCCUCUUGa -5'
14011 3' -55 NC_003521.1 + 164947 0.66 0.972125
Target:  5'- cCGGCGG-CUCgcgUCGCCG-GaGAGGGCc -3'
miRNA:   3'- -GUUGCCgGAGa--AGCGGCaC-CUCUUGa -5'
14011 3' -55 NC_003521.1 + 136255 0.66 0.969314
Target:  5'- gCAGCgaGGCCUgaU--CCGUGGAGAACUu -3'
miRNA:   3'- -GUUG--CCGGAgaAgcGGCACCUCUUGA- -5'
14011 3' -55 NC_003521.1 + 183017 0.66 0.969314
Target:  5'- -uGCGGCagCUgggCGUCGUGGaAGAACa -3'
miRNA:   3'- guUGCCGgaGAa--GCGGCACC-UCUUGa -5'
14011 3' -55 NC_003521.1 + 59708 0.66 0.969314
Target:  5'- uCAACuGCCg---CGCCGUGGccGAGCUg -3'
miRNA:   3'- -GUUGcCGGagaaGCGGCACCu-CUUGA- -5'
14011 3' -55 NC_003521.1 + 43401 0.66 0.969314
Target:  5'- -cAUGGCCUCUUCGCuuucggcguCGUGGccaGACa -3'
miRNA:   3'- guUGCCGGAGAAGCG---------GCACCuc-UUGa -5'
14011 3' -55 NC_003521.1 + 74223 0.66 0.966307
Target:  5'- gCAGCaGGCCgUCggCGCCGUgacGGuGGACg -3'
miRNA:   3'- -GUUG-CCGG-AGaaGCGGCA---CCuCUUGa -5'
14011 3' -55 NC_003521.1 + 21937 0.67 0.963098
Target:  5'- gGGCGGCCUCgggcuggaGCaGUGGGcGAGCg -3'
miRNA:   3'- gUUGCCGGAGaag-----CGgCACCU-CUUGa -5'
14011 3' -55 NC_003521.1 + 120545 0.67 0.963098
Target:  5'- uCGGCGGCCggcggUC-CCG-GGGGAGCg -3'
miRNA:   3'- -GUUGCCGGaga--AGcGGCaCCUCUUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.