miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14011 5' -60.8 NC_003521.1 + 91093 0.66 0.830262
Target:  5'- aGGGGCCCgucugcgCCuGCGCcggucGGgGAUUCCc -3'
miRNA:   3'- -CCUCGGGaa-----GGuCGCG-----CCgCUAGGGa -5'
14011 5' -60.8 NC_003521.1 + 158066 0.66 0.830262
Target:  5'- -cGGCCCg-CCGGuCGCGcGUGAUCUCg -3'
miRNA:   3'- ccUCGGGaaGGUC-GCGC-CGCUAGGGa -5'
14011 5' -60.8 NC_003521.1 + 235618 0.66 0.830262
Target:  5'- cGGAGCCCgaCC-GCGUGGUG-UUUCa -3'
miRNA:   3'- -CCUCGGGaaGGuCGCGCCGCuAGGGa -5'
14011 5' -60.8 NC_003521.1 + 124917 0.66 0.829475
Target:  5'- cGGGGCCCgugUUCAGCaCGGUGuacagcaGUCCg- -3'
miRNA:   3'- -CCUCGGGa--AGGUCGcGCCGC-------UAGGga -5'
14011 5' -60.8 NC_003521.1 + 162912 0.66 0.822316
Target:  5'- aGGAcGCCCUgUUGGUGC-GCGAUCUCUu -3'
miRNA:   3'- -CCU-CGGGAaGGUCGCGcCGCUAGGGA- -5'
14011 5' -60.8 NC_003521.1 + 222552 0.66 0.822316
Target:  5'- -cGGCCCUcCCGuCGCGGgcaGGUCCCc -3'
miRNA:   3'- ccUCGGGAaGGUcGCGCCg--CUAGGGa -5'
14011 5' -60.8 NC_003521.1 + 110062 0.66 0.822316
Target:  5'- --uGCUCccCCGGCGCGGCGcucgcgCCCg -3'
miRNA:   3'- ccuCGGGaaGGUCGCGCCGCua----GGGa -5'
14011 5' -60.8 NC_003521.1 + 24456 0.66 0.821513
Target:  5'- aGGcAGCCCUUcugcucugccuggCCAGCGCGuGCugGAUCUa- -3'
miRNA:   3'- -CC-UCGGGAA-------------GGUCGCGC-CG--CUAGGga -5'
14011 5' -60.8 NC_003521.1 + 111477 0.66 0.819902
Target:  5'- cGGGCCUUUCCcuccuucgcGGCGCucaaccgccugcugGGCGAccucuUCCCg -3'
miRNA:   3'- cCUCGGGAAGG---------UCGCG--------------CCGCU-----AGGGa -5'
14011 5' -60.8 NC_003521.1 + 7715 0.66 0.815033
Target:  5'- uGGGGCUCUUUuuggguggggagggCGGCGCGaGCGGcggaggcggcggcagUCCCa -3'
miRNA:   3'- -CCUCGGGAAG--------------GUCGCGC-CGCU---------------AGGGa -5'
14011 5' -60.8 NC_003521.1 + 152897 0.66 0.814217
Target:  5'- aGAGCaugcCCGGCGCGGCGG-CCa- -3'
miRNA:   3'- cCUCGggaaGGUCGCGCCGCUaGGga -5'
14011 5' -60.8 NC_003521.1 + 13831 0.66 0.814217
Target:  5'- uGGuGUCCggugUCUguauuuggcucGGCGCGGgGGUCUCUg -3'
miRNA:   3'- -CCuCGGGa---AGG-----------UCGCGCCgCUAGGGA- -5'
14011 5' -60.8 NC_003521.1 + 125461 0.66 0.805972
Target:  5'- -cGGCCCUggCCAGCGaCGcGUGAccUCCUg -3'
miRNA:   3'- ccUCGGGAa-GGUCGC-GC-CGCU--AGGGa -5'
14011 5' -60.8 NC_003521.1 + 42534 0.66 0.805972
Target:  5'- cGGAGCCCc-CCAGCGguccuccGCGAcgCCCg -3'
miRNA:   3'- -CCUCGGGaaGGUCGCgc-----CGCUa-GGGa -5'
14011 5' -60.8 NC_003521.1 + 154232 0.66 0.805972
Target:  5'- cGAGCgCUUcuuccCCGGCuGCGGCGugCCCUg -3'
miRNA:   3'- cCUCGgGAA-----GGUCG-CGCCGCuaGGGA- -5'
14011 5' -60.8 NC_003521.1 + 69694 0.66 0.805972
Target:  5'- cGGuGGUCCUggugUCGGUgGCGGCGG-CCCUg -3'
miRNA:   3'- -CC-UCGGGAa---GGUCG-CGCCGCUaGGGA- -5'
14011 5' -60.8 NC_003521.1 + 65393 0.66 0.797588
Target:  5'- aGGGCCCcUCCAGCaagaucccaaGGUGAgUCCCg -3'
miRNA:   3'- cCUCGGGaAGGUCGcg--------CCGCU-AGGGa -5'
14011 5' -60.8 NC_003521.1 + 221810 0.66 0.796742
Target:  5'- uGGGCUCcgUCGGCGgGGCGGgcgugucUCCCUc -3'
miRNA:   3'- cCUCGGGaaGGUCGCgCCGCU-------AGGGA- -5'
14011 5' -60.8 NC_003521.1 + 16077 0.66 0.789929
Target:  5'- cGGAGCCCcgacgcgcuggccgCCuGCGuCGGCGAgcaCCa -3'
miRNA:   3'- -CCUCGGGaa------------GGuCGC-GCCGCUag-GGa -5'
14011 5' -60.8 NC_003521.1 + 45540 0.66 0.789929
Target:  5'- cGGGcGCCCcgUCAGCgGCGGCGAauggugagcguggagCCCUu -3'
miRNA:   3'- -CCU-CGGGaaGGUCG-CGCCGCUa--------------GGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.