miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14012 3' -59.1 NC_003521.1 + 140059 0.65 0.896982
Target:  5'- aGGCCU-CGuUGCACGagugcGCCAGGcccagcucgggguGCAUCa -3'
miRNA:   3'- -CCGGAcGC-ACGUGC-----CGGUCC-------------UGUAGc -5'
14012 3' -59.1 NC_003521.1 + 141201 0.66 0.891337
Target:  5'- uGGCCgugGCGcUGCGCcGCCGGGcgcuGCAggUCa -3'
miRNA:   3'- -CCGGa--CGC-ACGUGcCGGUCC----UGU--AGc -5'
14012 3' -59.1 NC_003521.1 + 181313 0.66 0.891337
Target:  5'- aGGCC-GCccGCG-GGCCAGGGCGcCGu -3'
miRNA:   3'- -CCGGaCGcaCGUgCCGGUCCUGUaGC- -5'
14012 3' -59.1 NC_003521.1 + 173487 0.66 0.891337
Target:  5'- cGGCCUGauUGacagcCugGGCgAGGAUGUCa -3'
miRNA:   3'- -CCGGACgcAC-----GugCCGgUCCUGUAGc -5'
14012 3' -59.1 NC_003521.1 + 17774 0.66 0.891337
Target:  5'- cGCCgGCG-GCggACGGUCAGGugaaggaaACAUCGc -3'
miRNA:   3'- cCGGaCGCaCG--UGCCGGUCC--------UGUAGC- -5'
14012 3' -59.1 NC_003521.1 + 54498 0.66 0.884871
Target:  5'- uGGCCgGCG-GCcCGGCguGGACcaggAUCu -3'
miRNA:   3'- -CCGGaCGCaCGuGCCGguCCUG----UAGc -5'
14012 3' -59.1 NC_003521.1 + 114929 0.66 0.884871
Target:  5'- gGGCCUcGUGcaUGCugGGCguGGACc--- -3'
miRNA:   3'- -CCGGA-CGC--ACGugCCGguCCUGuagc -5'
14012 3' -59.1 NC_003521.1 + 128427 0.66 0.884871
Target:  5'- cGGCCggucgGCGcacUGCGCcaGCCAGGugGaCGa -3'
miRNA:   3'- -CCGGa----CGC---ACGUGc-CGGUCCugUaGC- -5'
14012 3' -59.1 NC_003521.1 + 169312 0.66 0.884871
Target:  5'- cGGCCgGCGUcggucgcagcGuCGCGGCCGGcGugGuuUCGg -3'
miRNA:   3'- -CCGGaCGCA----------C-GUGCCGGUC-CugU--AGC- -5'
14012 3' -59.1 NC_003521.1 + 164587 0.66 0.884871
Target:  5'- cGCCUcacgcucgagGaCGUGCGCGcCCAGGGCGUg- -3'
miRNA:   3'- cCGGA----------C-GCACGUGCcGGUCCUGUAgc -5'
14012 3' -59.1 NC_003521.1 + 137485 0.66 0.884871
Target:  5'- cGCCgGCGUGuCGCGGCgccgcgaggucUGGGACGUg- -3'
miRNA:   3'- cCGGaCGCAC-GUGCCG-----------GUCCUGUAgc -5'
14012 3' -59.1 NC_003521.1 + 150929 0.66 0.884871
Target:  5'- cGGCgUGUGggccgaGCGCGGUCAGauCAUCGu -3'
miRNA:   3'- -CCGgACGCa-----CGUGCCGGUCcuGUAGC- -5'
14012 3' -59.1 NC_003521.1 + 152343 0.66 0.884213
Target:  5'- gGGCCcGCGccgacgcUGCucuggggcCGGCCGGGGCggCGc -3'
miRNA:   3'- -CCGGaCGC-------ACGu-------GCCGGUCCUGuaGC- -5'
14012 3' -59.1 NC_003521.1 + 114745 0.66 0.884213
Target:  5'- cGCCguggGgGUgGCGCGGCCAcagcgcuGGACA-CGg -3'
miRNA:   3'- cCGGa---CgCA-CGUGCCGGU-------CCUGUaGC- -5'
14012 3' -59.1 NC_003521.1 + 110646 0.66 0.882891
Target:  5'- cGCCggGCGccgGCACGGUCAcGGcccggucggccagcGCGUCGg -3'
miRNA:   3'- cCGGa-CGCa--CGUGCCGGU-CC--------------UGUAGC- -5'
14012 3' -59.1 NC_003521.1 + 128506 0.66 0.878878
Target:  5'- cGGCCUGCGacagcgagucgcuggGCagguGCGGCUGGcccGACGUCa -3'
miRNA:   3'- -CCGGACGCa--------------CG----UGCCGGUC---CUGUAGc -5'
14012 3' -59.1 NC_003521.1 + 108931 0.66 0.878203
Target:  5'- uGGCCaucaucaGUGCGCGGCUgucGGuGGCGUCu -3'
miRNA:   3'- -CCGGacg----CACGUGCCGG---UC-CUGUAGc -5'
14012 3' -59.1 NC_003521.1 + 79039 0.66 0.878203
Target:  5'- uGGCCgGCGUGacagaCAUGGCgUAGGGgGUCc -3'
miRNA:   3'- -CCGGaCGCAC-----GUGCCG-GUCCUgUAGc -5'
14012 3' -59.1 NC_003521.1 + 176080 0.66 0.878203
Target:  5'- cGGCCgGCGU-CuuGGCCAcGGCGUCc -3'
miRNA:   3'- -CCGGaCGCAcGugCCGGUcCUGUAGc -5'
14012 3' -59.1 NC_003521.1 + 138392 0.66 0.878203
Target:  5'- cGGCCUGCG-GCGCG-UCuGGAUcgCc -3'
miRNA:   3'- -CCGGACGCaCGUGCcGGuCCUGuaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.