miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14012 5' -55.4 NC_003521.1 + 137646 0.66 0.974635
Target:  5'- cGGuCGAGuacgugcucAUUCGcGCCGUGCGCGacgAGAu -3'
miRNA:   3'- -UC-GCUCu--------UGAGC-CGGCACGUGCa--UCU- -5'
14012 5' -55.4 NC_003521.1 + 68191 0.66 0.974635
Target:  5'- aAGCGGGGGCgcgugaGGaCCGaGgACGUGGAc -3'
miRNA:   3'- -UCGCUCUUGag----CC-GGCaCgUGCAUCU- -5'
14012 5' -55.4 NC_003521.1 + 63848 0.66 0.972018
Target:  5'- cGCGAGGugUCcaaGGCCcUGaCACgGUGGAc -3'
miRNA:   3'- uCGCUCUugAG---CCGGcAC-GUG-CAUCU- -5'
14012 5' -55.4 NC_003521.1 + 50628 0.66 0.972018
Target:  5'- cGUGAGA---CGGCCGuUGUACGUAu- -3'
miRNA:   3'- uCGCUCUugaGCCGGC-ACGUGCAUcu -5'
14012 5' -55.4 NC_003521.1 + 105886 0.66 0.972018
Target:  5'- gGGCGcAGAugcCggGGgCGUGUACGUAGGc -3'
miRNA:   3'- -UCGC-UCUu--GagCCgGCACGUGCAUCU- -5'
14012 5' -55.4 NC_003521.1 + 207398 0.66 0.972018
Target:  5'- gGGCGAGGACaaGGUcuaCGUGCugGg--- -3'
miRNA:   3'- -UCGCUCUUGagCCG---GCACGugCaucu -5'
14012 5' -55.4 NC_003521.1 + 129699 0.66 0.971472
Target:  5'- gGGCGAGGACgcccgcuucugcCGGCCGcgGCcCGUcGAc -3'
miRNA:   3'- -UCGCUCUUGa-----------GCCGGCa-CGuGCAuCU- -5'
14012 5' -55.4 NC_003521.1 + 74546 0.66 0.969212
Target:  5'- cGCG-GAccaGC-CGcGCCGUGCGCGUGc- -3'
miRNA:   3'- uCGCuCU---UGaGC-CGGCACGUGCAUcu -5'
14012 5' -55.4 NC_003521.1 + 167463 0.66 0.969212
Target:  5'- gAGCGu--GCUgagGGCCGUGCGCGgcGc -3'
miRNA:   3'- -UCGCucuUGAg--CCGGCACGUGCauCu -5'
14012 5' -55.4 NC_003521.1 + 169004 0.66 0.969212
Target:  5'- aGGCGGGcGACggGGCCG-GCACGa--- -3'
miRNA:   3'- -UCGCUC-UUGagCCGGCaCGUGCaucu -5'
14012 5' -55.4 NC_003521.1 + 102862 0.66 0.969212
Target:  5'- uGGCGuAGGuCUgGGCCGUGCguagcgagGCGcAGAg -3'
miRNA:   3'- -UCGC-UCUuGAgCCGGCACG--------UGCaUCU- -5'
14012 5' -55.4 NC_003521.1 + 85111 0.66 0.966211
Target:  5'- cGGCGGcGGCagCGGCgGgcgGCACGUAGc -3'
miRNA:   3'- -UCGCUcUUGa-GCCGgCa--CGUGCAUCu -5'
14012 5' -55.4 NC_003521.1 + 75984 0.66 0.966211
Target:  5'- gAGCGGcc-CUCGccgggcGCCGUcaGCACGUAGAa -3'
miRNA:   3'- -UCGCUcuuGAGC------CGGCA--CGUGCAUCU- -5'
14012 5' -55.4 NC_003521.1 + 240080 0.66 0.966211
Target:  5'- cGGCGuGGGGCUUgcacgugguggGGuuGUGCACGuUGGGg -3'
miRNA:   3'- -UCGC-UCUUGAG-----------CCggCACGUGC-AUCU- -5'
14012 5' -55.4 NC_003521.1 + 33292 0.66 0.966211
Target:  5'- uGCGAGAGCUCGuaCaUGC-CGgcGAa -3'
miRNA:   3'- uCGCUCUUGAGCcgGcACGuGCauCU- -5'
14012 5' -55.4 NC_003521.1 + 186148 0.66 0.966211
Target:  5'- --gGAGuucAGCUCGGCCugcGUGCACGgccaGGAc -3'
miRNA:   3'- ucgCUC---UUGAGCCGG---CACGUGCa---UCU- -5'
14012 5' -55.4 NC_003521.1 + 39853 0.66 0.966211
Target:  5'- cGGCGuGGGGCUUgcacgugguggGGuuGUGCACGuUGGGg -3'
miRNA:   3'- -UCGC-UCUUGAG-----------CCggCACGUGC-AUCU- -5'
14012 5' -55.4 NC_003521.1 + 165853 0.66 0.9659
Target:  5'- gGGCGAGcacaggaAGCUCcaGCgGUGCACGUGc- -3'
miRNA:   3'- -UCGCUC-------UUGAGc-CGgCACGUGCAUcu -5'
14012 5' -55.4 NC_003521.1 + 35864 0.66 0.96301
Target:  5'- gGGCGAGAAUuugauUUGGCgCGUGCA-GUAc- -3'
miRNA:   3'- -UCGCUCUUG-----AGCCG-GCACGUgCAUcu -5'
14012 5' -55.4 NC_003521.1 + 127364 0.66 0.96301
Target:  5'- uGCGAGAACgucaacgucUGGUCGcGCGCGUAc- -3'
miRNA:   3'- uCGCUCUUGa--------GCCGGCaCGUGCAUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.