miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14013 3' -53 NC_003521.1 + 116372 0.66 0.994136
Target:  5'- --------cCGAGCUGcUGCUGCCGcGCg -3'
miRNA:   3'- caaguagaaGCUCGAC-AUGGCGGC-CG- -5'
14013 3' -53 NC_003521.1 + 36675 0.66 0.994136
Target:  5'- ---gGUCUcggcCGAGCUGagGCCGggcuCCGGCg -3'
miRNA:   3'- caagUAGAa---GCUCGACa-UGGC----GGCCG- -5'
14013 3' -53 NC_003521.1 + 221701 0.66 0.994136
Target:  5'- -cUCGUUgcCGAGCacgcagugGUACgUGCCGGCc -3'
miRNA:   3'- caAGUAGaaGCUCGa-------CAUG-GCGGCCG- -5'
14013 3' -53 NC_003521.1 + 25618 0.66 0.993257
Target:  5'- cUUCAc---CGGGCUGgcGCUGCUGGCg -3'
miRNA:   3'- cAAGUagaaGCUCGACa-UGGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 148812 0.66 0.993257
Target:  5'- cGUUCAUCgugCGcGGCg--ACCGCCuGCc -3'
miRNA:   3'- -CAAGUAGaa-GC-UCGacaUGGCGGcCG- -5'
14013 3' -53 NC_003521.1 + 57976 0.66 0.993164
Target:  5'- -aUCGUCcUCGcuGCUGUugucagcGCCGCCGaucGCg -3'
miRNA:   3'- caAGUAGaAGCu-CGACA-------UGGCGGC---CG- -5'
14013 3' -53 NC_003521.1 + 110598 0.66 0.992681
Target:  5'- ---gGUCcUUGGGCgagggcggcugcaucUGUACCGCgGGCa -3'
miRNA:   3'- caagUAGaAGCUCG---------------ACAUGGCGgCCG- -5'
14013 3' -53 NC_003521.1 + 169196 0.66 0.992276
Target:  5'- cUUCAaCaUCGAGCUG-AUCGCCuucgGGCc -3'
miRNA:   3'- cAAGUaGaAGCUCGACaUGGCGG----CCG- -5'
14013 3' -53 NC_003521.1 + 121091 0.66 0.992276
Target:  5'- aGUUCAUCUUcCGGGCcgGggccaucCCGCUgaGGCu -3'
miRNA:   3'- -CAAGUAGAA-GCUCGa-Cau-----GGCGG--CCG- -5'
14013 3' -53 NC_003521.1 + 184353 0.66 0.992276
Target:  5'- ----cUCUUCGGGCgg-GCCGUggcgCGGCg -3'
miRNA:   3'- caaguAGAAGCUCGacaUGGCG----GCCG- -5'
14013 3' -53 NC_003521.1 + 109804 0.66 0.992276
Target:  5'- -gUCAUUgugUCGGGCcaggaUGUagGCCGCCcGCg -3'
miRNA:   3'- caAGUAGa--AGCUCG-----ACA--UGGCGGcCG- -5'
14013 3' -53 NC_003521.1 + 145645 0.66 0.992276
Target:  5'- aGUUCcgCgcCGAGCgcgagGUGCCcUCGGCc -3'
miRNA:   3'- -CAAGuaGaaGCUCGa----CAUGGcGGCCG- -5'
14013 3' -53 NC_003521.1 + 154453 0.66 0.992276
Target:  5'- cUUCccCUUCcgcacGCUGUuggucaccggcACCGCCGGCg -3'
miRNA:   3'- cAAGuaGAAGcu---CGACA-----------UGGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 189938 0.66 0.991184
Target:  5'- -aUCAUCaUCGucGCgg-GCCGCCGaGCc -3'
miRNA:   3'- caAGUAGaAGCu-CGacaUGGCGGC-CG- -5'
14013 3' -53 NC_003521.1 + 16729 0.66 0.989974
Target:  5'- --gCGagUUCG-GCg--ACCGCCGGCg -3'
miRNA:   3'- caaGUagAAGCuCGacaUGGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 154702 0.66 0.989974
Target:  5'- cUUCAgCaUCGAGaaGUA-CGCCGGCg -3'
miRNA:   3'- cAAGUaGaAGCUCgaCAUgGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 236467 0.66 0.989974
Target:  5'- cGggCcgCgaUGAGCga-ACCGCCGGCg -3'
miRNA:   3'- -CaaGuaGaaGCUCGacaUGGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 162756 0.66 0.989974
Target:  5'- aGUUCAUCUUCGAcaccgcacGCgugGUggACUGCguggaCGGCg -3'
miRNA:   3'- -CAAGUAGAAGCU--------CGa--CA--UGGCG-----GCCG- -5'
14013 3' -53 NC_003521.1 + 120265 0.66 0.989456
Target:  5'- -gUUAUCccCGGGCgcucccccgggACCGCCGGCc -3'
miRNA:   3'- caAGUAGaaGCUCGaca--------UGGCGGCCG- -5'
14013 3' -53 NC_003521.1 + 44216 0.66 0.988638
Target:  5'- --gCAUCcucaaCGGGCUGcucaagcucUGCCGCCGuGCg -3'
miRNA:   3'- caaGUAGaa---GCUCGAC---------AUGGCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.