miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14013 5' -66.7 NC_003521.1 + 137986 0.65 0.559215
Target:  5'- -cGCUguGUCCGCGCGCaGGucgaucucggcgucGAGGUGCg -3'
miRNA:   3'- gaCGG--CGGGCGCGCGaCC--------------CUCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 129406 0.66 0.552813
Target:  5'- uUGcCCGCCCGCuuGCagaaaUGGGGGaGcCGCUg -3'
miRNA:   3'- gAC-GGCGGGCGcgCG-----ACCCUC-C-GCGA- -5'
14013 5' -66.7 NC_003521.1 + 52940 0.66 0.552813
Target:  5'- -cGCCGCCCGUGcCGCcc-GAGGUGgUg -3'
miRNA:   3'- gaCGGCGGGCGC-GCGaccCUCCGCgA- -5'
14013 5' -66.7 NC_003521.1 + 36384 0.66 0.552813
Target:  5'- gUGCUGCuuuCCGUGCuGCUGGcggcagcgcGGGGCGUg -3'
miRNA:   3'- gACGGCG---GGCGCG-CGACC---------CUCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 17793 0.66 0.543705
Target:  5'- -gGCCGUCgGCGUGCUGGcc-GUGCg -3'
miRNA:   3'- gaCGGCGGgCGCGCGACCcucCGCGa -5'
14013 5' -66.7 NC_003521.1 + 35488 0.66 0.543705
Target:  5'- gCUGCCG-CCGC-CGa--GGAGGCGCc -3'
miRNA:   3'- -GACGGCgGGCGcGCgacCCUCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 94964 0.66 0.543705
Target:  5'- -cGCCGCCCGC-CGCcGGGcccAGaGaCGCg -3'
miRNA:   3'- gaCGGCGGGCGcGCGaCCC---UC-C-GCGa -5'
14013 5' -66.7 NC_003521.1 + 201510 0.66 0.542797
Target:  5'- -aGCCGCCCGCGaCGCcgacgaaUGGuuccgcuacGGCGCc -3'
miRNA:   3'- gaCGGCGGGCGC-GCG-------ACCcu-------CCGCGa -5'
14013 5' -66.7 NC_003521.1 + 1282 0.66 0.542797
Target:  5'- -aGCCGCCCGCGaCGCcgacgaaUGGuuccgcuacGGCGCc -3'
miRNA:   3'- gaCGGCGGGCGC-GCG-------ACCcu-------CCGCGa -5'
14013 5' -66.7 NC_003521.1 + 50297 0.66 0.534648
Target:  5'- gCUGCCG-CCGCaccuCGCUccucagccaGGGAGGCaGCg -3'
miRNA:   3'- -GACGGCgGGCGc---GCGA---------CCCUCCG-CGa -5'
14013 5' -66.7 NC_003521.1 + 49344 0.66 0.534648
Target:  5'- aUGCCGUCUGCGCGUgugguggccgGGuGAGGaaGCg -3'
miRNA:   3'- gACGGCGGGCGCGCGa---------CC-CUCCg-CGa -5'
14013 5' -66.7 NC_003521.1 + 206299 0.66 0.534648
Target:  5'- -cGCCGCUCGCGCGuCUcGGcccgcGGcCGCUa -3'
miRNA:   3'- gaCGGCGGGCGCGC-GAcCCu----CC-GCGA- -5'
14013 5' -66.7 NC_003521.1 + 43836 0.66 0.534648
Target:  5'- -cGCCGCCgGC-CGC-GGGcccgucacAGGCGCc -3'
miRNA:   3'- gaCGGCGGgCGcGCGaCCC--------UCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 153682 0.66 0.534648
Target:  5'- aCUG-CGCCCGCccaacaccucGCGCuccuUGGGAcGCGCg -3'
miRNA:   3'- -GACgGCGGGCG----------CGCG----ACCCUcCGCGa -5'
14013 5' -66.7 NC_003521.1 + 184156 0.66 0.525644
Target:  5'- aCUG-CGaCCUgGUGCGCgagcGGGAGGUGCa -3'
miRNA:   3'- -GACgGC-GGG-CGCGCGa---CCCUCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 166211 0.66 0.525644
Target:  5'- -cGCUGUUgGCGCgGC-GGcGAGGCGCg -3'
miRNA:   3'- gaCGGCGGgCGCG-CGaCC-CUCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 84878 0.66 0.525644
Target:  5'- -gGCCGCCCG-GUcC-GGGuGGCGCg -3'
miRNA:   3'- gaCGGCGGGCgCGcGaCCCuCCGCGa -5'
14013 5' -66.7 NC_003521.1 + 102007 0.66 0.516698
Target:  5'- -cGCCGCCaucagGCGCGCcauGGAGG-GCa -3'
miRNA:   3'- gaCGGCGGg----CGCGCGac-CCUCCgCGa -5'
14013 5' -66.7 NC_003521.1 + 139854 0.66 0.516698
Target:  5'- -cGCCGU--GCGCGCcGGGcacGGCGCUu -3'
miRNA:   3'- gaCGGCGggCGCGCGaCCCu--CCGCGA- -5'
14013 5' -66.7 NC_003521.1 + 123050 0.66 0.516698
Target:  5'- -cGCCGCCaccaUGCuGCUGGGAcGGCGg- -3'
miRNA:   3'- gaCGGCGGgc--GCG-CGACCCU-CCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.