miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14016 5' -51.4 NC_003521.1 + 23944 0.74 0.85496
Target:  5'- cUGCGAcgaccucaucGGUCUCGCCCGcagaggUGGUguGCGUc -3'
miRNA:   3'- -ACGUU----------UUAGAGCGGGC------ACUAguCGCG- -5'
14016 5' -51.4 NC_003521.1 + 22385 0.74 0.830585
Target:  5'- aGUggGGUCUUGUUCGUGGUCcuGUGCg -3'
miRNA:   3'- aCGuuUUAGAGCGGGCACUAGu-CGCG- -5'
14016 5' -51.4 NC_003521.1 + 153396 0.75 0.812534
Target:  5'- cGCAGGAUCUccucgugcaggugCGCCaccggCGUGGUCAGCaGCa -3'
miRNA:   3'- aCGUUUUAGA-------------GCGG-----GCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 69345 0.77 0.708977
Target:  5'- cGCGGua-CUCGCCCGUcuGA-CAGCGCg -3'
miRNA:   3'- aCGUUuuaGAGCGGGCA--CUaGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 72200 0.8 0.555815
Target:  5'- cGCAGGAUCU-GCCCGUGAcugcacgaGGCGCa -3'
miRNA:   3'- aCGUUUUAGAgCGGGCACUag------UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 105203 0.71 0.937778
Target:  5'- cGUggGAUC-CGCCCGcGAgCuGCGCg -3'
miRNA:   3'- aCGuuUUAGaGCGGGCaCUaGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 54896 0.71 0.942489
Target:  5'- cGCAGuggCUgCGCaCCGUuugcagGAUCAGCGCc -3'
miRNA:   3'- aCGUUuuaGA-GCG-GGCA------CUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 194897 0.7 0.971891
Target:  5'- cGCGAGA--UCGCCUGggcGAUCuuuguGCGCa -3'
miRNA:   3'- aCGUUUUagAGCGGGCa--CUAGu----CGCG- -5'
14016 5' -51.4 NC_003521.1 + 65146 0.7 0.971891
Target:  5'- cGCAAgcgGAcCUCGCacgggCCGUGGagUCAGUGCg -3'
miRNA:   3'- aCGUU---UUaGAGCG-----GGCACU--AGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 125683 0.7 0.971609
Target:  5'- aGUugauGAUCUCGUCCGUG-UCGaagaacuGCGCg -3'
miRNA:   3'- aCGuu--UUAGAGCGGGCACuAGU-------CGCG- -5'
14016 5' -51.4 NC_003521.1 + 98379 0.7 0.968981
Target:  5'- gGCGAAGUggCGCCCGaGGcuucggCGGCGCu -3'
miRNA:   3'- aCGUUUUAgaGCGGGCaCUa-----GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 124967 0.7 0.965864
Target:  5'- aGCAGGAUCUgguUGCCCuccacgCGGCGCa -3'
miRNA:   3'- aCGUUUUAGA---GCGGGcacua-GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 166745 0.7 0.962532
Target:  5'- gGgAAGAcCUCGCCCGccaGAcagCGGCGCg -3'
miRNA:   3'- aCgUUUUaGAGCGGGCa--CUa--GUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 236164 0.7 0.958981
Target:  5'- aUGCGGcGUUUCGgaaaccCCCGUGAUCcgcuGGCGUg -3'
miRNA:   3'- -ACGUUuUAGAGC------GGGCACUAG----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 224904 0.7 0.958981
Target:  5'- aGCAGAAUCUCcugcgaggGCUCGUaGAUguacaGGCGCg -3'
miRNA:   3'- aCGUUUUAGAG--------CGGGCA-CUAg----UCGCG- -5'
14016 5' -51.4 NC_003521.1 + 104282 0.7 0.958981
Target:  5'- aGCAGcuggauAUCaCGCCCGagGAUCuGCGCu -3'
miRNA:   3'- aCGUUu-----UAGaGCGGGCa-CUAGuCGCG- -5'
14016 5' -51.4 NC_003521.1 + 193599 0.71 0.9512
Target:  5'- cGCGGu-UUUCGCCCcuUGGUCGGUGUg -3'
miRNA:   3'- aCGUUuuAGAGCGGGc-ACUAGUCGCG- -5'
14016 5' -51.4 NC_003521.1 + 149966 0.71 0.9512
Target:  5'- -------cCUCGgCCGUGGUCAGCaGCa -3'
miRNA:   3'- acguuuuaGAGCgGGCACUAGUCG-CG- -5'
14016 5' -51.4 NC_003521.1 + 92156 0.71 0.949954
Target:  5'- gGCuccuuccaccggCUCGCCCGggGGUCGGgGCg -3'
miRNA:   3'- aCGuuuua-------GAGCGGGCa-CUAGUCgCG- -5'
14016 5' -51.4 NC_003521.1 + 88068 0.71 0.942489
Target:  5'- cGCGGuGGUCggcggCGCCCGUGAccacgggccacUCGGCGa -3'
miRNA:   3'- aCGUU-UUAGa----GCGGGCACU-----------AGUCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.