miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 3' -53.8 NC_003521.1 + 180067 1.1 0.006438
Target:  5'- cACUGUCGCACGAUGUCGUUGCGCGUCa -3'
miRNA:   3'- -UGACAGCGUGCUACAGCAACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 109194 0.78 0.532021
Target:  5'- --gGUCGCGUGGUGUgcaUGUUGCGCGUCa -3'
miRNA:   3'- ugaCAGCGUGCUACA---GCAACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 174219 0.76 0.601424
Target:  5'- --gGUCGCGCGG-GUCGggcagggGCGCGUCg -3'
miRNA:   3'- ugaCAGCGUGCUaCAGCaa-----CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 123895 0.76 0.631625
Target:  5'- aGCUGUCGCGUGcUGUCGgcGCGCGg- -3'
miRNA:   3'- -UGACAGCGUGCuACAGCaaCGCGCag -5'
14021 3' -53.8 NC_003521.1 + 183437 0.73 0.75971
Target:  5'- cGCUGUgGCGCGAgaUCGacgcccugGCGCGUCa -3'
miRNA:   3'- -UGACAgCGUGCUacAGCaa------CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 148048 0.71 0.854475
Target:  5'- gGCUGUCGCccauguACGAgaUGUC---GCGCGUCg -3'
miRNA:   3'- -UGACAGCG------UGCU--ACAGcaaCGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 50656 0.71 0.869445
Target:  5'- gACUGUCGCGCG-UGUCcUUGaaCGUCa -3'
miRNA:   3'- -UGACAGCGUGCuACAGcAACgcGCAG- -5'
14021 3' -53.8 NC_003521.1 + 95815 0.71 0.89034
Target:  5'- --cGUCG-GCGAUGUCGgcGCGCGa- -3'
miRNA:   3'- ugaCAGCgUGCUACAGCaaCGCGCag -5'
14021 3' -53.8 NC_003521.1 + 103407 0.7 0.894934
Target:  5'- cGCUGguggCGUACaugaggucgggguuGAUGUCGacGCGCGUCu -3'
miRNA:   3'- -UGACa---GCGUG--------------CUACAGCaaCGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 174266 0.7 0.915107
Target:  5'- cGCUGgCGCGCcagGUCGgugaaGCGCGUCu -3'
miRNA:   3'- -UGACaGCGUGcuaCAGCaa---CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 88415 0.7 0.920728
Target:  5'- cGCUcUUGCACGAaGgCGcUGCGCGUCu -3'
miRNA:   3'- -UGAcAGCGUGCUaCaGCaACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 196312 0.69 0.926117
Target:  5'- uGCUGgccaugcagCGCAUGGgccgGUUGUUGCGCugcGUCa -3'
miRNA:   3'- -UGACa--------GCGUGCUa---CAGCAACGCG---CAG- -5'
14021 3' -53.8 NC_003521.1 + 226487 0.69 0.926117
Target:  5'- uACUgGUCGCG-GGUGUCGUaggcguagaUGCGCGa- -3'
miRNA:   3'- -UGA-CAGCGUgCUACAGCA---------ACGCGCag -5'
14021 3' -53.8 NC_003521.1 + 124480 0.69 0.931275
Target:  5'- --cGUCGgGCGGcugGUCGUaGCGCGUg -3'
miRNA:   3'- ugaCAGCgUGCUa--CAGCAaCGCGCAg -5'
14021 3' -53.8 NC_003521.1 + 168954 0.69 0.939045
Target:  5'- cGCUGUCGC-CGucgcucccgcugcUGUCGccgacGCGCGUCg -3'
miRNA:   3'- -UGACAGCGuGCu------------ACAGCaa---CGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 121414 0.69 0.940896
Target:  5'- cGCUGgugcuugCGCAUGAagggcUGcggGUUGCGCGUCa -3'
miRNA:   3'- -UGACa------GCGUGCU-----ACag-CAACGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 110921 0.69 0.940896
Target:  5'- uGCUGUucCGCACGGUGcCGUUGgUGCa-- -3'
miRNA:   3'- -UGACA--GCGUGCUACaGCAAC-GCGcag -5'
14021 3' -53.8 NC_003521.1 + 123963 0.68 0.9496
Target:  5'- cACUG-CGCGCGcagGUCGUcGCG-GUCg -3'
miRNA:   3'- -UGACaGCGUGCua-CAGCAaCGCgCAG- -5'
14021 3' -53.8 NC_003521.1 + 56714 0.68 0.957406
Target:  5'- cGCUgGUCGCGuCGAcGUCGagcCGCGUCa -3'
miRNA:   3'- -UGA-CAGCGU-GCUaCAGCaacGCGCAG- -5'
14021 3' -53.8 NC_003521.1 + 5520 0.67 0.969872
Target:  5'- aGCcGUCGCAUc-UGUCGUcgccaguuggcgGCGCGUCg -3'
miRNA:   3'- -UGaCAGCGUGcuACAGCAa-----------CGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.