miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14021 5' -62.5 NC_003521.1 + 90822 0.66 0.755358
Target:  5'- aGGuGGcGUcgucguGCGGCG-GGUGCGcgccGCCCg -3'
miRNA:   3'- cCCuCC-CGu-----CGCCGCaCCACGC----UGGG- -5'
14021 5' -62.5 NC_003521.1 + 39223 0.66 0.755358
Target:  5'- cGGGcucGGGGaCAGCGGUGgcccgcGGcGCGuucaGCCCc -3'
miRNA:   3'- -CCC---UCCC-GUCGCCGCa-----CCaCGC----UGGG- -5'
14021 5' -62.5 NC_003521.1 + 121681 0.66 0.752704
Target:  5'- cGGAGGGCcGUGauGCGcGGUGagguauccgaguucCGACCCc -3'
miRNA:   3'- cCCUCCCGuCGC--CGCaCCAC--------------GCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 212048 0.66 0.738417
Target:  5'- cGGAGcGCAGaaagugcagcgcuagGGCgGUGGcGCGGCCCg -3'
miRNA:   3'- cCCUCcCGUCg--------------CCG-CACCaCGCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 107324 0.66 0.737517
Target:  5'- cGGGuuGGGCcccgcagcAGCGGCGccaGGUGauccuCGACCUc -3'
miRNA:   3'- -CCCu-CCCG--------UCGCCGCa--CCAC-----GCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 168561 0.66 0.737517
Target:  5'- uGGcGGGCuGCGGguaagGUGGcgGCuGACCCa -3'
miRNA:   3'- cCCuCCCGuCGCCg----CACCa-CG-CUGGG- -5'
14021 5' -62.5 NC_003521.1 + 186618 0.67 0.728475
Target:  5'- aGGGcuacGCGGCGGCgGUGGUgGCGGCa- -3'
miRNA:   3'- -CCCucc-CGUCGCCG-CACCA-CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 87734 0.67 0.728475
Target:  5'- ------cCGGCGGCGUGGUG-GGCCCc -3'
miRNA:   3'- cccucccGUCGCCGCACCACgCUGGG- -5'
14021 5' -62.5 NC_003521.1 + 78719 0.67 0.719364
Target:  5'- aGGAGaGGCAGCGGUaga--GCGGCCa -3'
miRNA:   3'- cCCUC-CCGUCGCCGcaccaCGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 101912 0.67 0.719364
Target:  5'- aGGGcAGGcGCaccgAGCGGcCGUGGUGguaGauGCCCg -3'
miRNA:   3'- -CCC-UCC-CG----UCGCC-GCACCACg--C--UGGG- -5'
14021 5' -62.5 NC_003521.1 + 53164 0.67 0.719364
Target:  5'- --cGGGGaCGGCGGCGaggaGGUcgGCGACgCCg -3'
miRNA:   3'- cccUCCC-GUCGCCGCa---CCA--CGCUG-GG- -5'
14021 5' -62.5 NC_003521.1 + 218224 0.67 0.719364
Target:  5'- cGGAGGucaggcgaccGCAGgGGCcgucacgGGUGCGACgCg -3'
miRNA:   3'- cCCUCC----------CGUCgCCGca-----CCACGCUGgG- -5'
14021 5' -62.5 NC_003521.1 + 122709 0.67 0.710188
Target:  5'- cGGcGGGGCuggaGGCGGuCGUGGUcguggGCGACg- -3'
miRNA:   3'- -CCcUCCCG----UCGCC-GCACCA-----CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 106111 0.67 0.710188
Target:  5'- cGGGcacGGGCguGGCGGcCGUGG-GC-ACCUa -3'
miRNA:   3'- -CCCu--CCCG--UCGCC-GCACCaCGcUGGG- -5'
14021 5' -62.5 NC_003521.1 + 218689 0.67 0.704656
Target:  5'- -aGAGGGCGGCGGCGaaggcggaggagacGGcgGCGGCg- -3'
miRNA:   3'- ccCUCCCGUCGCCGCa-------------CCa-CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 123674 0.67 0.704656
Target:  5'- aGGGAGccGGCGcgcuGCGGCGUGGcgguggaagaggagGCGGCg- -3'
miRNA:   3'- -CCCUC--CCGU----CGCCGCACCa-------------CGCUGgg -5'
14021 5' -62.5 NC_003521.1 + 137039 0.67 0.700957
Target:  5'- cGGAGcaCGGCGGCGaGGUGCGcgaguucaagcACCUg -3'
miRNA:   3'- cCCUCccGUCGCCGCaCCACGC-----------UGGG- -5'
14021 5' -62.5 NC_003521.1 + 191086 0.67 0.700957
Target:  5'- uGGu-GGCGGCGGCG-GGcUGCGuCUCg -3'
miRNA:   3'- cCCucCCGUCGCCGCaCC-ACGCuGGG- -5'
14021 5' -62.5 NC_003521.1 + 197308 0.67 0.691676
Target:  5'- cGGGAgaggGGGCGGCaGGCGcugacggauguUGGccgccGCGGCCa -3'
miRNA:   3'- -CCCU----CCCGUCG-CCGC-----------ACCa----CGCUGGg -5'
14021 5' -62.5 NC_003521.1 + 6835 0.67 0.688883
Target:  5'- aGGAGGGCgccgaggagguuguAGUgggaGGCGUGGguaGCgGAUCCg -3'
miRNA:   3'- cCCUCCCG--------------UCG----CCGCACCa--CG-CUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.