miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 99880 0.68 0.920546
Target:  5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3'
miRNA:   3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 122944 0.68 0.930737
Target:  5'- gCACCGugaUCUCGAGCca--CgUGCGGGg -3'
miRNA:   3'- gGUGGC---AGAGCUUGacugGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 137180 0.68 0.930737
Target:  5'- gCCGCCG-C-CGAGCUGcCCCcGCuGGa -3'
miRNA:   3'- -GGUGGCaGaGCUUGACuGGGaCGcCC- -5'
14022 5' -56.3 NC_003521.1 + 210728 0.68 0.930737
Target:  5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3'
miRNA:   3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 201574 0.68 0.935509
Target:  5'- uCCaACCGgCUgGGGCUGaacGCCC-GCGGGc -3'
miRNA:   3'- -GG-UGGCaGAgCUUGAC---UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 113748 0.67 0.944413
Target:  5'- gCCGCC-UCUCGucGgUGGCCCUGCccGGc -3'
miRNA:   3'- -GGUGGcAGAGCu-UgACUGGGACG--CCc -5'
14022 5' -56.3 NC_003521.1 + 17651 0.67 0.948547
Target:  5'- aCACCGUgaUGAGCgaugcGGCCuccagaCUGCGGGc -3'
miRNA:   3'- gGUGGCAgaGCUUGa----CUGG------GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 221825 0.67 0.944413
Target:  5'- aCAUCGUUgugCaacAGCUGGCCgCUGUGGGc -3'
miRNA:   3'- gGUGGCAGa--Gc--UUGACUGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 120875 0.67 0.944413
Target:  5'- -uGCUGgccUUCGGACUGcCCCUggaGCGGGu -3'
miRNA:   3'- ggUGGCa--GAGCUUGACuGGGA---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 130490 0.67 0.953984
Target:  5'- aCACCG---CGAGCgcggccgcgucaugaUGGCCCUGCGGc -3'
miRNA:   3'- gGUGGCagaGCUUG---------------ACUGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 39885 0.67 0.95619
Target:  5'- gCGCCGUacaGggUguUGGCCgaCUGCGGGa -3'
miRNA:   3'- gGUGGCAgagCuuG--ACUGG--GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 11741 0.67 0.95619
Target:  5'- uCgGCCGUCaUCGAcgggcccgACUcGCCCUG-GGGa -3'
miRNA:   3'- -GgUGGCAG-AGCU--------UGAcUGGGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 24782 0.67 0.95619
Target:  5'- cUCAUCGUCUuuaccCGcGACUGGCCCUG-GGc -3'
miRNA:   3'- -GGUGGCAGA-----GC-UUGACUGGGACgCCc -5'
14022 5' -56.3 NC_003521.1 + 115907 0.67 0.948547
Target:  5'- aCACCGUgcUGAACacgGGCCCcgugcUGUGGGa -3'
miRNA:   3'- gGUGGCAgaGCUUGa--CUGGG-----ACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 16098 0.67 0.948547
Target:  5'- gCCugCGUCggCGAGC--ACCacggGCGGGa -3'
miRNA:   3'- -GGugGCAGa-GCUUGacUGGga--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48831 0.67 0.948547
Target:  5'- aCgGCUG-CUCGAcGCUGACgC-GCGGGa -3'
miRNA:   3'- -GgUGGCaGAGCU-UGACUGgGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 155887 0.66 0.963022
Target:  5'- aCACCuUCaUCGAGCgcacGCCCUGCGa- -3'
miRNA:   3'- gGUGGcAG-AGCUUGac--UGGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.