miRNA display CGI


Results 61 - 74 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 2733 0.66 0.959706
Target:  5'- gUCACCGcCUCGcuGGCUGGCUgCUGCuacugcaaaGGGa -3'
miRNA:   3'- -GGUGGCaGAGC--UUGACUGG-GACG---------CCC- -5'
14022 5' -56.3 NC_003521.1 + 155887 0.66 0.963022
Target:  5'- aCACCuUCaUCGAGCgcacGCCCUGCGa- -3'
miRNA:   3'- gGUGGcAG-AGCUUGac--UGGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 176523 0.66 0.963022
Target:  5'- gCCAgCGUCgucugUGAGCc-GCgCUGCGGGg -3'
miRNA:   3'- -GGUgGCAGa----GCUUGacUGgGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 193011 0.66 0.966143
Target:  5'- aCC-CCGUaCUgGAACUGACC--GCGGc -3'
miRNA:   3'- -GGuGGCA-GAgCUUGACUGGgaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 168406 0.66 0.969074
Target:  5'- gCCGCCGUUgguggcuagggCGGGCggcagGGCCgCggcgGCGGGc -3'
miRNA:   3'- -GGUGGCAGa----------GCUUGa----CUGG-Ga---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 208454 0.66 0.969074
Target:  5'- aCCGCCGUagauagUGcAGCUGACggUGUGGGa -3'
miRNA:   3'- -GGUGGCAga----GC-UUGACUGggACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 198542 0.66 0.971014
Target:  5'- gUACCGUCUgCGAGggccgcuuCUGGCUCUuucuaccgcuuucgGCGGGc -3'
miRNA:   3'- gGUGGCAGA-GCUU--------GACUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 102949 0.66 0.971552
Target:  5'- gUCGCgGUCcaggcgcUCGGGCgucggGGCUCUgGCGGGg -3'
miRNA:   3'- -GGUGgCAG-------AGCUUGa----CUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 211066 0.66 0.971819
Target:  5'- uCCugC-UCUCGcuCUGucgccguuGCCCgGCGGGg -3'
miRNA:   3'- -GGugGcAGAGCuuGAC--------UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 234647 0.66 0.971819
Target:  5'- -gAUCGUCUCGuucugcgcCUGGCCCcGCcaGGGg -3'
miRNA:   3'- ggUGGCAGAGCuu------GACUGGGaCG--CCC- -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5'
14022 5' -56.3 NC_003521.1 + 135362 0.66 0.974384
Target:  5'- gCGCCGUCUCcgcGGCgguuaucGCCC-GCGGGc -3'
miRNA:   3'- gGUGGCAGAGc--UUGac-----UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 188641 0.66 0.974384
Target:  5'- uCCugCGUCaacggaaucgCGGGCgGACCC-GCGGu -3'
miRNA:   3'- -GGugGCAGa---------GCUUGaCUGGGaCGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.