miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 135362 0.66 0.974384
Target:  5'- gCGCCGUCUCcgcGGCgguuaucGCCC-GCGGGc -3'
miRNA:   3'- gGUGGCAGAGc--UUGac-----UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 137180 0.68 0.930737
Target:  5'- gCCGCCG-C-CGAGCUGcCCCcGCuGGa -3'
miRNA:   3'- -GGUGGCaGaGCUUGACuGGGaCGcCC- -5'
14022 5' -56.3 NC_003521.1 + 149043 0.68 0.937358
Target:  5'- aCCGCCGcC-CGggUguggggggaugcggGACCC-GCGGGg -3'
miRNA:   3'- -GGUGGCaGaGCuuGa-------------CUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 151089 0.71 0.784309
Target:  5'- aCCGCCGacccCUCGggUcgGGCCgCUGgGGGa -3'
miRNA:   3'- -GGUGGCa---GAGCuuGa-CUGG-GACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 155887 0.66 0.963022
Target:  5'- aCACCuUCaUCGAGCgcacGCCCUGCGa- -3'
miRNA:   3'- gGUGGcAG-AGCUUGac--UGGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 163448 0.7 0.834217
Target:  5'- gCCACCGUCuUCGA----GCCCgugGUGGGc -3'
miRNA:   3'- -GGUGGCAG-AGCUugacUGGGa--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 168406 0.66 0.969074
Target:  5'- gCCGCCGUUgguggcuagggCGGGCggcagGGCCgCggcgGCGGGc -3'
miRNA:   3'- -GGUGGCAGa----------GCUUGa----CUGG-Ga---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 170755 0.69 0.897599
Target:  5'- cCCGCUGUa-CGuGCUGGCCCgacagGCGGu -3'
miRNA:   3'- -GGUGGCAgaGCuUGACUGGGa----CGCCc -5'
14022 5' -56.3 NC_003521.1 + 171348 0.68 0.920546
Target:  5'- aCCACCGUCugaccuUCGAcgUGAUCCUGCc-- -3'
miRNA:   3'- -GGUGGCAG------AGCUugACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 172537 0.66 0.974136
Target:  5'- uCCACCGUCaggCGGgggaucucgugccGCUGuCCCggggucgGCGGu -3'
miRNA:   3'- -GGUGGCAGa--GCU-------------UGACuGGGa------CGCCc -5'
14022 5' -56.3 NC_003521.1 + 173238 0.69 0.903653
Target:  5'- cCCGCgUGUUggCGAcuCUGGCCC-GCGGGg -3'
miRNA:   3'- -GGUG-GCAGa-GCUu-GACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 176523 0.66 0.963022
Target:  5'- gCCAgCGUCgucugUGAGCc-GCgCUGCGGGg -3'
miRNA:   3'- -GGUgGCAGa----GCUUGacUGgGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 179911 1.13 0.003358
Target:  5'- cCCACCGUCUCGAACUGACCCUGCGGGa -3'
miRNA:   3'- -GGUGGCAGAGCUUGACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 181030 0.68 0.935509
Target:  5'- gCGCCGUgUCGGugU--CCUUGCGGa -3'
miRNA:   3'- gGUGGCAgAGCUugAcuGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 188641 0.66 0.974384
Target:  5'- uCCugCGUCaacggaaucgCGGGCgGACCC-GCGGu -3'
miRNA:   3'- -GGugGCAGa---------GCUUGaCUGGGaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 193011 0.66 0.966143
Target:  5'- aCC-CCGUaCUgGAACUGACC--GCGGc -3'
miRNA:   3'- -GGuGGCA-GAgCUUGACUGGgaCGCCc -5'
14022 5' -56.3 NC_003521.1 + 197135 0.69 0.884871
Target:  5'- -aGCCaUCUgGGACgUGGCCCUGCuGGa -3'
miRNA:   3'- ggUGGcAGAgCUUG-ACUGGGACGcCC- -5'
14022 5' -56.3 NC_003521.1 + 198542 0.66 0.971014
Target:  5'- gUACCGUCUgCGAGggccgcuuCUGGCUCUuucuaccgcuuucgGCGGGc -3'
miRNA:   3'- gGUGGCAGA-GCUU--------GACUGGGA--------------CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 201574 0.68 0.935509
Target:  5'- uCCaACCGgCUgGGGCUGaacGCCC-GCGGGc -3'
miRNA:   3'- -GG-UGGCaGAgCUUGAC---UGGGaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.