miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 120345 0.66 0.959706
Target:  5'- gCGCC-UCUCGGcGgaGACaCCUGCGGa -3'
miRNA:   3'- gGUGGcAGAGCU-UgaCUG-GGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 118322 0.66 0.966143
Target:  5'- cCCGCCG-C-CGcgUUGGCCCUGCa-- -3'
miRNA:   3'- -GGUGGCaGaGCuuGACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 115907 0.67 0.948547
Target:  5'- aCACCGUgcUGAACacgGGCCCcgugcUGUGGGa -3'
miRNA:   3'- gGUGGCAgaGCUUGa--CUGGG-----ACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 113748 0.67 0.944413
Target:  5'- gCCGCC-UCUCGucGgUGGCCCUGCccGGc -3'
miRNA:   3'- -GGUGGcAGAGCu-UgACUGGGACG--CCc -5'
14022 5' -56.3 NC_003521.1 + 111547 0.72 0.775517
Target:  5'- aCCGCCGgcgccucuacCUCGAggugcgGCUGAgCCgGCGGGu -3'
miRNA:   3'- -GGUGGCa---------GAGCU------UGACUgGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 108430 0.66 0.959706
Target:  5'- aCAgCGUCUgcCGGA-UGACCUcGCGGGu -3'
miRNA:   3'- gGUgGCAGA--GCUUgACUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 103795 0.71 0.801515
Target:  5'- gCCGCCGUgCUCcGGCgagaUGACCgUGCGGa -3'
miRNA:   3'- -GGUGGCA-GAGcUUG----ACUGGgACGCCc -5'
14022 5' -56.3 NC_003521.1 + 102949 0.66 0.971552
Target:  5'- gUCGCgGUCcaggcgcUCGGGCgucggGGCUCUgGCGGGg -3'
miRNA:   3'- -GGUGgCAG-------AGCUUGa----CUGGGA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 99880 0.68 0.920546
Target:  5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3'
miRNA:   3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 97339 0.71 0.809915
Target:  5'- gCACCGUCUC--GCUGugCUUGCGc- -3'
miRNA:   3'- gGUGGCAGAGcuUGACugGGACGCcc -5'
14022 5' -56.3 NC_003521.1 + 84515 0.68 0.935509
Target:  5'- gCACCGUCUCcucgaaagaGAGCagcgaGACgCUGgGGGg -3'
miRNA:   3'- gGUGGCAGAG---------CUUGa----CUGgGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 84049 0.7 0.864279
Target:  5'- gCCACCuUCUCGAGCgagaGGCCCUGg--- -3'
miRNA:   3'- -GGUGGcAGAGCUUGa---CUGGGACgccc -5'
14022 5' -56.3 NC_003521.1 + 74736 0.74 0.63417
Target:  5'- cCUGCCGgcccgCUCccGCuaUGGCCCUGCGGGa -3'
miRNA:   3'- -GGUGGCa----GAGcuUG--ACUGGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 68806 0.69 0.891337
Target:  5'- gCGCCGUC-CGGAUaGA-CUUGCGGGc -3'
miRNA:   3'- gGUGGCAGaGCUUGaCUgGGACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 62646 0.68 0.909497
Target:  5'- aCACCGUCUCGuagguauCUGcguguucgUCCUGCGGu -3'
miRNA:   3'- gGUGGCAGAGCuu-----GACu-------GGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 61973 0.7 0.841996
Target:  5'- aCAUCGUCUCGGug-GACCaagcgcaGCGGGa -3'
miRNA:   3'- gGUGGCAGAGCUugaCUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 58724 0.71 0.809915
Target:  5'- cCCACCGUCUCcaGGCgGcggugcagcaGCCaCUGCGGGc -3'
miRNA:   3'- -GGUGGCAGAGc-UUGaC----------UGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 57423 0.75 0.614759
Target:  5'- cCCACCGUCUCGcgGACgGGCuCCUGCa-- -3'
miRNA:   3'- -GGUGGCAGAGC--UUGaCUG-GGACGccc -5'
14022 5' -56.3 NC_003521.1 + 48910 0.66 0.959706
Target:  5'- aCACCGUCUCuucGGCgccGACUaucagcgGCGGGg -3'
miRNA:   3'- gGUGGCAGAGc--UUGa--CUGGga-----CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48831 0.67 0.948547
Target:  5'- aCgGCUG-CUCGAcGCUGACgC-GCGGGa -3'
miRNA:   3'- -GgUGGCaGAGCU-UGACUGgGaCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.