Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14022 | 5' | -56.3 | NC_003521.1 | + | 103795 | 0.71 | 0.801515 |
Target: 5'- gCCGCCGUgCUCcGGCgagaUGACCgUGCGGa -3' miRNA: 3'- -GGUGGCA-GAGcUUG----ACUGGgACGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 209200 | 0.75 | 0.576128 |
Target: 5'- cCCACCGUCggccgCGGuggcccugccaGCUGACCCUGCc-- -3' miRNA: 3'- -GGUGGCAGa----GCU-----------UGACUGGGACGccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 57423 | 0.75 | 0.614759 |
Target: 5'- cCCACCGUCUCGcgGACgGGCuCCUGCa-- -3' miRNA: 3'- -GGUGGCAGAGC--UUGaCUG-GGACGccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 3657 | 0.71 | 0.79039 |
Target: 5'- gCCGCCGUCugccUCGGcgGCcggGACCCUcgucggaugcugacGCGGGa -3' miRNA: 3'- -GGUGGCAG----AGCU--UGa--CUGGGA--------------CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 204024 | 0.72 | 0.736497 |
Target: 5'- uCCGCCGUCcgCGAGCggcuccgcagcgcgUGGCCCUGCc-- -3' miRNA: 3'- -GGUGGCAGa-GCUUG--------------ACUGGGACGccc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 193011 | 0.66 | 0.966143 |
Target: 5'- aCC-CCGUaCUgGAACUGACC--GCGGc -3' miRNA: 3'- -GGuGGCA-GAgCUUGACUGGgaCGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 58724 | 0.71 | 0.809915 |
Target: 5'- cCCACCGUCUCcaGGCgGcggugcagcaGCCaCUGCGGGc -3' miRNA: 3'- -GGUGGCAGAGc-UUGaC----------UGG-GACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 44619 | 0.71 | 0.81817 |
Target: 5'- aCACaCG-CUCGAGCUGcagaugauGCgCCUGUGGGu -3' miRNA: 3'- gGUG-GCaGAGCUUGAC--------UG-GGACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 61973 | 0.7 | 0.841996 |
Target: 5'- aCAUCGUCUCGGug-GACCaagcgcaGCGGGa -3' miRNA: 3'- gGUGGCAGAGCUugaCUGGga-----CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 155887 | 0.66 | 0.963022 |
Target: 5'- aCACCuUCaUCGAGCgcacGCCCUGCGa- -3' miRNA: 3'- gGUGGcAG-AGCUUGac--UGGGACGCcc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 48910 | 0.66 | 0.959706 |
Target: 5'- aCACCGUCUCuucGGCgccGACUaucagcgGCGGGg -3' miRNA: 3'- gGUGGCAGAGc--UUGa--CUGGga-----CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 2733 | 0.66 | 0.959706 |
Target: 5'- gUCACCGcCUCGcuGGCUGGCUgCUGCuacugcaaaGGGa -3' miRNA: 3'- -GGUGGCaGAGC--UUGACUGG-GACG---------CCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 39885 | 0.67 | 0.95619 |
Target: 5'- gCGCCGUacaGggUguUGGCCgaCUGCGGGa -3' miRNA: 3'- gGUGGCAgagCuuG--ACUGG--GACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 130490 | 0.67 | 0.953984 |
Target: 5'- aCACCG---CGAGCgcggccgcgucaugaUGGCCCUGCGGc -3' miRNA: 3'- gGUGGCagaGCUUG---------------ACUGGGACGCCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 113748 | 0.67 | 0.944413 |
Target: 5'- gCCGCC-UCUCGucGgUGGCCCUGCccGGc -3' miRNA: 3'- -GGUGGcAGAGCu-UgACUGGGACG--CCc -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 17651 | 0.67 | 0.948547 |
Target: 5'- aCACCGUgaUGAGCgaugcGGCCuccagaCUGCGGGc -3' miRNA: 3'- gGUGGCAgaGCUUGa----CUGG------GACGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 201574 | 0.68 | 0.935509 |
Target: 5'- uCCaACCGgCUgGGGCUGaacGCCC-GCGGGc -3' miRNA: 3'- -GG-UGGCaGAgCUUGAC---UGGGaCGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 210728 | 0.68 | 0.930737 |
Target: 5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3' miRNA: 3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 137180 | 0.68 | 0.930737 |
Target: 5'- gCCGCCG-C-CGAGCUGcCCCcGCuGGa -3' miRNA: 3'- -GGUGGCaGaGCUUGACuGGGaCGcCC- -5' |
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14022 | 5' | -56.3 | NC_003521.1 | + | 197135 | 0.69 | 0.884871 |
Target: 5'- -aGCCaUCUgGGACgUGGCCCUGCuGGa -3' miRNA: 3'- ggUGGcAGAgCUUG-ACUGGGACGcCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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