miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14022 5' -56.3 NC_003521.1 + 130490 0.67 0.953984
Target:  5'- aCACCG---CGAGCgcggccgcgucaugaUGGCCCUGCGGc -3'
miRNA:   3'- gGUGGCagaGCUUG---------------ACUGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 16098 0.67 0.948547
Target:  5'- gCCugCGUCggCGAGC--ACCacggGCGGGa -3'
miRNA:   3'- -GGugGCAGa-GCUUGacUGGga--CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 115907 0.67 0.948547
Target:  5'- aCACCGUgcUGAACacgGGCCCcgugcUGUGGGa -3'
miRNA:   3'- gGUGGCAgaGCUUGa--CUGGG-----ACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 48831 0.67 0.948547
Target:  5'- aCgGCUG-CUCGAcGCUGACgC-GCGGGa -3'
miRNA:   3'- -GgUGGCaGAGCU-UGACUGgGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 17651 0.67 0.948547
Target:  5'- aCACCGUgaUGAGCgaugcGGCCuccagaCUGCGGGc -3'
miRNA:   3'- gGUGGCAgaGCUUGa----CUGG------GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 113748 0.67 0.944413
Target:  5'- gCCGCC-UCUCGucGgUGGCCCUGCccGGc -3'
miRNA:   3'- -GGUGGcAGAGCu-UgACUGGGACG--CCc -5'
14022 5' -56.3 NC_003521.1 + 221825 0.67 0.944413
Target:  5'- aCAUCGUUgugCaacAGCUGGCCgCUGUGGGc -3'
miRNA:   3'- gGUGGCAGa--Gc--UUGACUGG-GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 120875 0.67 0.944413
Target:  5'- -uGCUGgccUUCGGACUGcCCCUggaGCGGGu -3'
miRNA:   3'- ggUGGCa--GAGCUUGACuGGGA---CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 149043 0.68 0.937358
Target:  5'- aCCGCCGcC-CGggUguggggggaugcggGACCC-GCGGGg -3'
miRNA:   3'- -GGUGGCaGaGCuuGa-------------CUGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 201574 0.68 0.935509
Target:  5'- uCCaACCGgCUgGGGCUGaacGCCC-GCGGGc -3'
miRNA:   3'- -GG-UGGCaGAgCUUGAC---UGGGaCGCCC- -5'
14022 5' -56.3 NC_003521.1 + 181030 0.68 0.935509
Target:  5'- gCGCCGUgUCGGugU--CCUUGCGGa -3'
miRNA:   3'- gGUGGCAgAGCUugAcuGGGACGCCc -5'
14022 5' -56.3 NC_003521.1 + 84515 0.68 0.935509
Target:  5'- gCACCGUCUCcucgaaagaGAGCagcgaGACgCUGgGGGg -3'
miRNA:   3'- gGUGGCAGAG---------CUUGa----CUGgGACgCCC- -5'
14022 5' -56.3 NC_003521.1 + 210728 0.68 0.930737
Target:  5'- aUCACCGUCcCGGAaucguaGGCCgUgGCGGGg -3'
miRNA:   3'- -GGUGGCAGaGCUUga----CUGGgA-CGCCC- -5'
14022 5' -56.3 NC_003521.1 + 137180 0.68 0.930737
Target:  5'- gCCGCCG-C-CGAGCUGcCCCcGCuGGa -3'
miRNA:   3'- -GGUGGCaGaGCUUGACuGGGaCGcCC- -5'
14022 5' -56.3 NC_003521.1 + 122944 0.68 0.930737
Target:  5'- gCACCGugaUCUCGAGCca--CgUGCGGGg -3'
miRNA:   3'- gGUGGC---AGAGCUUGacugGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 171348 0.68 0.920546
Target:  5'- aCCACCGUCugaccuUCGAcgUGAUCCUGCc-- -3'
miRNA:   3'- -GGUGGCAG------AGCUugACUGGGACGccc -5'
14022 5' -56.3 NC_003521.1 + 99880 0.68 0.920546
Target:  5'- gCCACCGUCUCcAugUaGGggUCgUGCGGGu -3'
miRNA:   3'- -GGUGGCAGAGcUugA-CU--GGgACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 47903 0.68 0.920546
Target:  5'- cUCGCCGUCcUGA--UGGCCCUGaCGGc -3'
miRNA:   3'- -GGUGGCAGaGCUugACUGGGAC-GCCc -5'
14022 5' -56.3 NC_003521.1 + 189100 0.68 0.915128
Target:  5'- gCACCGagUCGGACgacgaggaGACCacgCUGUGGGa -3'
miRNA:   3'- gGUGGCagAGCUUGa-------CUGG---GACGCCC- -5'
14022 5' -56.3 NC_003521.1 + 206156 0.68 0.915128
Target:  5'- aCUGCC-UCUaCGAGCUGGCcuccgaCCUGgGGGg -3'
miRNA:   3'- -GGUGGcAGA-GCUUGACUG------GGACgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.