Results 61 - 79 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14023 | 3' | -53.9 | NC_003521.1 | + | 74068 | 0.67 | 0.97331 |
Target: 5'- gAugGUCga--CCGCAUCCA-GCUGGu -3' miRNA: 3'- -UugCAGaaaaGGCGUAGGUgCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 72077 | 0.69 | 0.926061 |
Target: 5'- cGCGUCcgacCCGCAaCCGCGUCGGc -3' miRNA: 3'- uUGCAGaaaaGGCGUaGGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 70692 | 0.71 | 0.834924 |
Target: 5'- cGGCGUCUgcgCCGCAagcugcgucggcgCCuGCGCCGGAu -3' miRNA: 3'- -UUGCAGAaaaGGCGUa------------GG-UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 65761 | 0.67 | 0.964434 |
Target: 5'- gGACG-CUgacgggCCGCAUCaCAccgcCGCCGGAc -3' miRNA: 3'- -UUGCaGAaaa---GGCGUAG-GU----GCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 53663 | 0.7 | 0.890095 |
Target: 5'- cACGUUgcUUCCGCuccugCCGcCGCCGGGc -3' miRNA: 3'- uUGCAGaaAAGGCGua---GGU-GCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 50442 | 0.67 | 0.975876 |
Target: 5'- -uCGUCgugggCUGUAUCgACGUCGGAg -3' miRNA: 3'- uuGCAGaaaa-GGCGUAGgUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 48786 | 0.71 | 0.861655 |
Target: 5'- cGCGUCUg--CCGCG--CACGCCGGc -3' miRNA: 3'- uUGCAGAaaaGGCGUagGUGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 46529 | 0.66 | 0.982491 |
Target: 5'- gGGCGUCUUcUCCaggcGCAccagggCCucGCGCCGGGu -3' miRNA: 3'- -UUGCAGAAaAGG----CGUa-----GG--UGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 44111 | 0.66 | 0.98436 |
Target: 5'- -uCGUCaagaUCUGCAUCCugGCCa-- -3' miRNA: 3'- uuGCAGaaa-AGGCGUAGGugCGGccu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 38787 | 0.68 | 0.949645 |
Target: 5'- aGACGUCguggCUGCAUU--CGCCGGAc -3' miRNA: 3'- -UUGCAGaaaaGGCGUAGguGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 30060 | 0.67 | 0.970552 |
Target: 5'- uACGUCUcagUCUGUgccGUCCcCGCCGGc -3' miRNA: 3'- uUGCAGAaa-AGGCG---UAGGuGCGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 27685 | 0.67 | 0.97685 |
Target: 5'- cAACGUCUUcaguucgcugcggCCGCA-CCACGCCa-- -3' miRNA: 3'- -UUGCAGAAaa-----------GGCGUaGGUGCGGccu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 26599 | 0.67 | 0.970552 |
Target: 5'- --gGUCUUcgugggCUGCAUCCugGCCGu- -3' miRNA: 3'- uugCAGAAaa----GGCGUAGGugCGGCcu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 26140 | 0.71 | 0.854026 |
Target: 5'- cAACGUCguggucUUCCGCGUCUACggacugcugcuGCUGGAg -3' miRNA: 3'- -UUGCAGaa----AAGGCGUAGGUG-----------CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 24539 | 0.69 | 0.936191 |
Target: 5'- cAACGUCg--UCCGC-UCCACgaGCUGGc -3' miRNA: 3'- -UUGCAGaaaAGGCGuAGGUG--CGGCCu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 23076 | 0.73 | 0.786499 |
Target: 5'- cGCGUCUguggugUCUGCGUCCgugGCCGGGc -3' miRNA: 3'- uUGCAGAaa----AGGCGUAGGug-CGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 15682 | 0.66 | 0.98046 |
Target: 5'- cGCGaCUgggUCCGCAaCCACGUCGa- -3' miRNA: 3'- uUGCaGAaa-AGGCGUaGGUGCGGCcu -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 12937 | 0.66 | 0.98046 |
Target: 5'- aAGCGUUUgcaacagCGCAUcCCGCGUCGGGa -3' miRNA: 3'- -UUGCAGAaaag---GCGUA-GGUGCGGCCU- -5' |
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14023 | 3' | -53.9 | NC_003521.1 | + | 690 | 0.68 | 0.949645 |
Target: 5'- cAGCG-C-UUUCCGCG-CC-CGCCGGGa -3' miRNA: 3'- -UUGCaGaAAAGGCGUaGGuGCGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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